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. 2014 Jan 10;9(1):e85148. doi: 10.1371/journal.pone.0085148

Table 1. Genes Downregulated in the Lungs of PBS-treated DDAH1-transgenic Mice versus PBS-treated Wild Type Mice.

Symbol Name Fold Change
Immune/Defense Response
Rag1 recombination activating gene 1 0.0020
Irg1 immunoresponsive gene 1 0.0042
Tlr6 toll-like receptor 6 0.0224
Saa3 serum amyloid A 3 0.0265
Clec4e C-type lectin domain family 4, member e 0.0360
Ptafr platelet-activating factor receptor 0.0656
Pram1 PML-RAR alpha-regulated adaptor molecule 1 0.1024
Clec4d C-type lectin domain family 4, member d 0.1306
Cfd complement factor D (adipsin) 0.1491
Cd4 CD4 antigen 0.2667
Tnfrsf1b tumor necrosis factor receptor superfamily, member 1b 0.3327
Il1rn interleukin 1 receptor antagonist 0.3365
Lilrb3 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3 0.3596
Sell selectin, lymphocyte 0.3826
Acsl1 acyl-CoA synthetase long-chain family member 1 0.4620
Cybb cytochrome b-245, beta polypeptide 0.4694
Lcn2 lipocalin 2 0.4804
Tgtp1 T-cell specific GTPase 1 0.4907
Lilrb4 leukocyte immunoglobulin-like receptor, subfamily B, member 4 0.4931
Tgtp2 T-cell specific GTPase 2 0.4986
Csf2rb colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage) 0.5378
Ptprc protein tyrosine phosphatase, receptor type, C 0.6052
Cell Structure/Adhesion/Migration
Sprr2a2 small proline-rich protein 2A2 0.0179
Sprr2a1 small proline-rich protein 2A1 0.0179
Adipoq adiponectin, C1Q and collagen domain containing 0.0702
S100a9 S100 calcium binding protein A9 (calgranulin B) 0.0736
Pla2g7 phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma) 0.1651
S100a8 S100 calcium binding protein A8 (calgranulin A) 0.2070
H2-M2 histocompatibility 2, M region locus 2 0.2210
Sema4d sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D 0.2948
Itgb2 integrin beta 2 0.4746
Myh6 myosin, heavy polypeptide 6, cardiac muscle, alpha 0.4752
Itgal integrin alpha L 0.4913
Actc1 actin, alpha, cardiac muscle 1 0.5662
Csf3r colony stimulating factor 3 receptor (granulocyte) 0.5942
Cytokine/Chemokine
Ccl4 chemokine (C-C motif) ligand 4 0.0000
Ccl3 chemokine (C-C motif) ligand 3 0.0114
Cxcl2 chemokine (C-X-C motif) ligand 2 0.0236
Il1b interleukin 1 beta 0.1342
Transcriptional Factor
Tcf7 transcription factor 7, T-cell specific 0.4134
Stat1 signal transducer and activator of transcription 1 0.5833
Other
Arpp21 cyclic AMP-regulated phosphoprotein, 21 0.0036
Gxylt2 glucoside xylosyltransferase 2 0.0112
1700071M16Rik RIKEN cDNA 1700071M16 gene 0.0427
Trim30b tripartite motif-containing 30B 0.0516
Cd177 CD177 antigen 0.0746
Niacr1 niacin receptor 1 0.0993
Mmp8 matrix metallopeptidase 8 0.1307
Slfn4 schlafen 4 0.1469
Acpp acid phosphatase, prostate 0.2390
Steap4 STEAP family member 4 0.2412
F13a1 coagulation factor XIII, A1 subunit 0.2631
Gpnmb glycoprotein (transmembrane) nmb 0.3398
Slpi secretory leukocyte peptidase inhibitor 0.3547
Bpifa1 BPI fold containing family A, member 1 0.3796
Gp49a glycoprotein 49 A 0.4032
Car3 carbonic anhydrase 3 0.4062
Gm1966 predicted gene 1966 0.5319
Ctss cathepsin S 0.6001
Fth1 ferritin heavy chain 1 0.6449

NCBI Gene Expression Omnibus accession numbers GSE49047 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE49047).