Table 1.
Summary of RNAz scans of predicted structured regions in influenza B and C
| Segment | Protein coded a | Region | z-score b | SCI b | p-class b | |
|---|---|---|---|---|---|---|
| Influenza B |
8 |
NS1, NEP |
30–220 |
−1.44 (−2.49) |
0.78 (0.86) |
0.30 (0.94) |
| |
|
|
450–620 |
−2.27 (−3.29) |
0.83 (0.91) |
0.81 (0.99) |
| |
|
|
720–840 |
−0.98 |
0.94 |
0.37 |
| |
7 |
M1, BM2 |
0–170 |
−2.12 (−2.63) |
0.66 (0.78) |
0.28 (0.56) |
| |
5 |
NP |
1040–1160 |
−2.29 |
0.86 |
0.93 |
| |
4 |
HA |
0–160 |
−2.22 (−3.21) |
0.78 (0.87) |
0.76 (0.96) |
| |
|
|
780–950 |
−0.81 (−1.4) |
0.80 (0.89) |
0.20 (0.67) |
| |
3 |
PA |
630–750 |
−2.19 |
0.91 |
0.94 |
| |
|
|
1870–1990 |
−2.25 |
0.66 |
0.31 |
| |
|
|
2010–2130 |
−0.85 |
0.96 |
0.46 |
| |
2 |
PB1 |
650–770 |
−1.67 |
0.81 |
0.39 |
| |
|
|
1100–1220 |
−0.57 |
0.97 |
0.31 |
| |
1 |
PB2 |
210–350 |
−2.82 (−3.12) |
0.68 (0.69) |
0.85 (0.94) |
| |
|
|
670–810 |
−1.49 (−1.85) |
0.83 (0.86) |
0.38 (0.62) |
| |
|
|
1320–1450 |
−2.50 (−2.51) |
0.76 (0.81) |
0.77 (0.91) |
| Influenza C |
7 |
NS1, NEP |
190–400 |
−2.16 (−3.55) |
0.70 (0.82) |
0.41 (0.99) |
| |
|
|
640–800 |
−1.39 (−2.04) |
0.83 (0.87) |
0.31 (0.79) |
| |
6 |
M1, CM2 |
0–160 |
−2.12 (−2.87) |
0.86 (0.91) |
0.72 (0.96) |
| |
|
|
160–310 |
−1.13 (−1.36) |
0.92 (0.93) |
0.33 (0.54) |
| |
|
|
350–470 |
−0.68 |
0.99 |
0.37 |
| |
|
|
450–680 |
−1.54 (−2.65) |
0.96 (0.99) |
0.65 (0.98) |
| |
|
|
670–790 |
−1.05 |
0.97 |
0.54 |
| 990–1133 | −0.97 (−1.19) | 0.98 | 0.54 (0.71) |
aProteins coded via splicing are italicized.
bAverage values for overlapping windows with p-class <0.3. When the region is defined by more than one 120 nt window and the most favorable value for a 120 nt window differs from the average value of overlapping windows, it is presented in parentheses.