Table 7.

Average and RMS Fluctations of the RMS Differences with respect to the crystal or NMR structures of the Ca atoms for the residues in the secondary structures and for all residues. Values in Å.

Protein		Secondary				All Residues
		Average		RMS Fluc.		Average		RMS Fluc.
		Drude	C36	Drude	C36	Drude	C36	Drude	C36
A	GB1					2.70	1.28	0.49	0.47
B	IU01	1.38	1.81	0.27	0.40	1.59	2.09	0.31	0.41
C	1EJG	0.81	1.08	0.09	0.10	0.99	1.19	0.14	0.13
			1.09		0.10		1.21		0.13
D	1P7E	0.56	1.31	0.10	0.19	0.65	1.72	0.12	0.31
E	1MJC	0.51	0.57	0.08	0.09	1.56	1.65	0.19	0.26
F	1UBQ	0.72	0.95	0.11	0.14	2.17	1.67	0.69	0.31
G	3ZZP	0.98	1.33	0.11	0.15	1.48	1.64	0.15	0.19
			1.46		0.33		1.80		0.33
H	4IEJ	0.69	1.33	0.07	0.40	1.07	1.63	0.11	0.39
			1.72		0.52		2.12		0.56
I	3VQF	1.01	1.08	0.11	0.14	1.17	1.91	0.15	0.27
			1.27		0.27		1.73		0.29
J	135L	1.34	1.60	0.19	0.44	1.53	1.97	0.19	0.42
			1.59		0.31		2.19		0.34
K	1IFC	0.87	1.78	0.10	0.27	1.05	1.92	0.12	0.25
L	1BYI	1.22	1.51	0.25	0.24	1.33	2.30	0.22	0.34
			1.30		0.18		2.33		0.49

Averages over 100 ns, with the exception of 135L (93 and 100 ns) and 1BYI (100 ns). The second row for C, G, H, I, J and L is for the second Drude simulation with those systems.