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. 2014 Jan 21;5:4. doi: 10.3389/fmicb.2014.00004

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Copyright © 2014 Ruhanen, Hurley, Ghosh, O'Brien, Johnston and Shields.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Heat map visualization of the distribution of known virulence motifs amongst effector proteins from a selection of 60 organisms represented in the MvirDB. Columns: The bacterial species name with the total number of UPCs indicated in brackets at the start of the description. Purple, High GC Gram+ bacteria; Blue, Firmicutes; Yellow, a-proteobacteria; Light Brown, b-proteobacteria; Dark Brown, e-proteobacteria; Green, g-proteobacteria (non-enterobacteria); Red, g-proteobacteria (enterobacteria); Black, others (CFB). Rows: The motif regular expression with the total number of incidences in UPCs across all 60 organisms indicated in brackets at the start of the description. Color scale: The logarithm of the normalized N_UPC returned from the SLiMSearch results.