Table 1. Ectocarpoid strains used for phaeovirus screening (adapted from Schroeder [16]).
Strain | Species | Family | Location | Genome | Number of sequence variants * | Concatenations** | ||
kb | DNApol | MCP | Helicase | |||||
Esil | Ectocarpus siliculosus | Ectocarpaceae | New Zealand | 336 | 1 (1) | 1 (1) | 1 (1) | 1 |
Efas | Ectocarpus fasciculatus | Ectocarpaceae | France | 320 | 2 (2) | 1 (1) | 2 (2) | 2 |
Plit | Pylaiella littoralis | Acinetosporaceae | Alaska | 280 | 1 (1) | 1 (1) | 1 (1) | 1 |
Hinc | Hincksia hincksiae | Acinetosporaceae | France | 240 | 1 (1) | - | 2 (1) | - |
Mcla | Myriotrichia clavaeformis | Chordariaceae | Argentina | 320 | 1 (1) | 2 (2) | - | 2 |
Firr | Feldmannia irregularis | Acinetosporaceae | Canary Islands | 180 | 2 (2) | 3 (2) | 2 (2) | 4 |
Flex | Feldmannia simplex. | Acinetosporaceae | Ireland | 220 | 9 (8) | 6 (4) | 8 (3) | 22 |
: variant in DNA sequence (HG003317 - HG003355) with amino acid variation indicated in parentheses. A negative PCR result is indicated by a minus symbol.
: possible permutations for DNApol and MCP as seen in Figure 4.