Skip to main content
. 2014 Jan 21;9(1):e86736. doi: 10.1371/journal.pone.0086736

Table 4. Details of oxidation-binding modes for 2- or 3-fluorinated galactose.

Galactose
Productive 2-oxidation binding mode a Competing binding mode
Variant H167A V546C H450G H450G/V546C H167A V546C H450G H450G/V546C
Ligand 3FGal 3FGal 3FGal 3FGal 2FGal 2FGal 2FGal 2FGal
Oxidation site C2 C2 C2 C1 C1 C3 C3
Stereoisomer β β β β β αb αb
Loop conformer closed semi-open semi-open semi-open semi-open semi-open semi-open semi-open
Sugar-protein interactions c O1 V546 O O1 V546 O O1 V546 O O1 H548 Nε2 O1 H548 Nε2 O1 D452 Oδ2 O1 D452 Oδ2
O1 H548 Nε2 O1 N593 Nδ2 O1 N593 Nδ2 O1 T169 Oγ1 O1 T169 Oγ1
O2 H548 Nε2 O2 H548 Nε2 O2 H548 Nε2 F2 Q448 Nε2 F2 Q448 Nε2 F2 Q448 Nε2 F2 Q448 Nε2
O2 N593 Nδ2 O2 N593 Nδ2 O2 N593 Nδ2 F2 N593 Nδ2 F2 N593 Nδ2 F2 N593 Nδ2
F3 Q448 Nε2 F3 Q448 Nε2 F3 Q448 Nε2 O3 D452 Oδ2 O3 D452 Oδ2 O3 H548 Nε2 O3 H548 Nε2
F3 N593 Nδ2 O3 Q448 Nε2 O3 N593 Nδ2 O3 N593 Nδ2
O4 D452 Oδ2 O4 D452 Oδ2 O4 D452 Oδ2 O4 D452 Oδ2 O4 D452 Oδ2 O4 V546 O O4 V546 O
O4 T169 Oγ1 O4 T169 Oγ1 O4 T169 Oγ1 O6 L545 O O6 L545 O
O6 Y456 Oη O6 Y456 Oη O6 Y456 Oη O6 Y456 Oη O6 Y456 Oη O6 Y456 Oη O6 Y456 Oη
a

The following three criteria are considered consistent with a productive binding mode: (i) The sugar is oriented for oxidation at C2; (ii) the substrate-binding loop is in the semi-open conformation; (iii) the side chain Oγ1 group of Thr169 is pointing away from the flavin N(5)/O(4) locus.

b

The ability of P2O variants to stabilize either the α- or β-anomer is uncorrelated to space group and crystal contacts, and depends solely on the new structural context provided by the mutation.

c

Italicized interactions represent interactions with the catalytic residues.