Table 1.
|
Pop_WA |
Pop_SK |
---|---|---|
(Sumatra) | (Borneo) | |
No. of individuals |
15 |
16 |
iRRL stacks per individual (predicted)a |
305,574 |
305,574 |
Median iRRL target efficiencyb |
97% |
86% |
Total no. of beads per population |
675,295,801 |
762,234,081 |
Total no. of mapped reads per population |
528,081,935 |
646,922,204 |
Median no. of mapped reads per individual |
32,345,177 |
43,451,986 |
% reads mapped F3/F5 (mappability)c |
74.9/7.3 |
67.0/17.0 |
Mean no. of bphiqual per individuald |
10,930,563 |
18,186,855 |
Median sequence coverage per individuale | 41× | 42× |
aPredicted by in-silico digest of the orangutan reference genome ponAbe2 (Sumatran) with HaeIII. bPercentage of sequenced sites that were predicted by the in-silico digest. cF3/F5 are the sequence read directions of the paired end sequencing mode. dNumber of sequenced base pairs passing all high quality filters (sites used for SNP detection). eGATK estimates based on bphiqual.