Table 4.
Summary of selected MCL BLASTline protein cluster groups.
| Cluster Family | Clusters | Proteins | Proteins in Chromosomes | Proteins in Plasmids | Percent in Chromosomes | Percent in Plasmids |
|---|---|---|---|---|---|---|
| Pan-genome (all 14) | 1126 | 28110 | 23686 | 4424 | 84.26 | 15.74 |
| 13 Fix+ genomes | 105 | 1126 | 619 | 507 | 54.97 | 45.03 |
| 11 NodABC+ genomes | 9 | 113 | 60 | 53 | 53.10 | 46.90 |
| azc+bbt+bja+bra | 206 | 1150 | 1141 | 9 | 99.22 | 0.78 |
| bbt+bja+bra | 857 | 2981 | 2976 | 5 | 99.83 | 0.17 |
| bbt+bra | 577 | 1224 | 1224 | 0 | 100.00 | 0.00 |
| mlo+mes | 86 | 192 | 167 | 25 | 86.98 | 13.02 |
| mes+mlo+rhi+ret+rec+rlg+rlt+rle+smd+sme | 214 | 2424 | 2081 | 343 | 85.85 | 14.15 |
| mlo+rhi+ret+rec+rlg+rlt+rle+smd+sme | 161 | 1661 | 1140 | 521 | 68.63 | 31.37 |
| rhi+ret+rec+rlg+rlt+rle+smd+sme | 155 | 1347 | 1122 | 225 | 83.30 | 16.70 |
| rhi+ret+rec+rlg+rlt+rle | 51 | 347 | 191 | 156 | 55.04 | 44.96 |
| rlg+rlt+rle | 92 | 286 | 197 | 89 | 68.88 | 31.12 |
| smd+sme | 253 | 555 | 182 | 373 | 32.79 | 67.21 |
| rhi+ret+rec | 6 | 21 | 5 | 16 | 23.81 | 76.19 |
| rhi+smd+sme | 242 | 767 | 476 | 291 | 62.06 | 37.94 |
| ret+rec | 123 | 262 | 71 | 191 | 27.10 | 72.90 |
| ret+rec+rlg+rlt+rle | 352 | 1866 | 1436 | 430 | 76.96 | 23.04 |
| Singletons | ||||||
| azc | 956 | 986 | 986 | 0 | 100.00 | 0.00 |
| bja | 1760 | 1839 | 1839 | 0 | 100.00 | 0.00 |
| bbt | 1051 | 1107 | 1005 | 102 | 90.79 | 9.21 |
| bra | 959 | 987 | 987 | 0 | 100.00 | 0.00 |
| mlo | 1706 | 1809 | 1613 | 196 | 89.17 | 10.83 |
| mes | 857 | 899 | 761 | 138 | 84.65 | 15.35 |
| ret | 333 | 344 | 196 | 148 | 56.98 | 43.02 |
| rec | 563 | 563 | 374 | 189 | 66.43 | 33.57 |
| rlg | 576 | 602 | 260 | 342 | 43.19 | 56.81 |
| rlt | 490 | 492 | 286 | 206 | 58.13 | 41.87 |
| rle | 542 | 550 | 276 | 274 | 50.18 | 49.82 |
| rhi | 758 | 797 | 356 | 441 | 44.67 | 55.33 |
| smd | 598 | 639 | 317 | 322 | 49.61 | 50.39 |
| sme | 472 | 498 | 170 | 328 | 34.14 | 65.86 |