Table 3.

The total number of peptides identified for the protein markers indicated is given for each isolate for EF Tu and Enol protein markers. The species identified using the LC-MS-MS datasets are indicated. The number of peptides specific for the indicated species given along with the number of conflict peptides is also given. Isolates that had multiple conflicting species indicated using specific peptides are shaded in grey. All were considered conflict peptides.

		Elongation factor Tu (EF Tu)			Enolase (Enol)
Isolate Name	Species Indicated	Total	Specific	Conflict	Total	Specific	Conflict
9304034	S. saprophyticus	23	5	1	19	6	1
900-200-150	S. warneri	30	4	0	9	2	0
aso15c64	S. aureus	20	4	0	18	8	0
aso15c84	S. aureus	18	2	0	17	9	0
aso1c8	S. aureus	21	3	0	15	7	0
aso2c21	S. warneri	38	6	1	10	3	0
aso2c44	S. simulans	36	6	0	16	7	0
aso2c53	S. epidermidis	30	6	0	12	4	0
aso3c22	S. saprophyticus	36	10	1	29	13	1
aso3c6	S. aureus	19	3	0	16	6	1
asuno15c6Y	S. aureus	19	3	0	21	12	0
asuno215c6Y	S. aureus	12	3	0	15	6	0
CNS 10	S. simulans	48	15	1	26	8	1
CNS 18	S. aureus	22	6	1	14	5	2
CNS 20	S. aureus	23	2	0	18	9	0
CNS 6	S. lugdunensis	35	8	1	28	6	1
CNS 7	S. simulans	43	9	1	18	2	1
CNS 8	S. lugdunensis	39	9	3	26	7	1
Cow970 RR	S. saprophyticus	29	7	0	15	6	0
aso2 c53	S. epidermidis	29	7	0	6	0	1
mus 5949	S. chromogenes	39	19	13	9	0	9
CNS1	S. simulans	21	8	0	2	0	0
990RR	S. simulans	21	5	2	6	1	0
aso15c106	S. lugdunensis/S. aureus/S. saprophyticus/S. capitis/S.warneri	29	0	3	9	0	4
aso15c28	S. aureus/S. lugdunensis	26	0	0	12	0	4
Cow924RR	S. warnerii/S. capitis/S. haemolyticus/S. Saprophyticus	11	0	1	5	0	3
aso3c59w	S. lugdunensis/S. cohnii/S. saprophyticus	31	0	7	10	0	2
CNS5	S. lugdunensis/S. cohnii/S. saprophyticus	45	0	22	6	0	0