Table 4.

The total number of peptides identified for the protein markers indicated is given for each isolate for citrate synthase (CS) and aconitate hydratase (AH) protein markers. The species identified using the LC-MS-MS datasets are indicated. The number of peptides specific for the indicated species given along with the number of conflict peptides. Isolates that had no dominant species indicated by EF Tu or Enol are indicated in grey along with the species indicated by CS or AH.

		Citrate synthase			Aconitate hydratase
Isolate Name	Species Indicated	Total	Specific	Conflict	Total	Specific	Conflict
9304034	S. saprophyticus	0	0	0	7	3	1
900-200-150	S. warneri	4	4	0	1	0	0
aso15c64	S. aureus	3	2	0	1	0	0
aso15c84	S. aureus	4	3	0	3	1	0
aso1c8	S. aureus	5	4	0	2	1	0
aso2c21	S. warneri	9	5	0	5	1	1
aso2c44	S. simulans	18	13	0	22	13	0
aso2C53	S. epidermidis	2	2	0	2	0	0
aso3C22	S. saprophyticus	14	10	0	22	13	0
aso3c6	S. aureus	5	3	0	3	1	0
asuno15c6y	S. aureus	5	4	0	4	2	0
asuno2-15c6y	S. aureus	1	0	0	3	2	0
CNS10	S. simulans	14	11	0	24	14	0
CNS18	S. aureus	5	4	0	3	1	0
CNS20	S. aureus	3	1	0	3	1	0
CNS6	S. lugdunensis	18	12	0	27	8	3
CNS7	S. simulans	16	13	0	26	14	1
CNS8	S. lugdunensis	9	6	0	15	6	0
Cow970RR	S. saprophyticus	1	1	0	6	2	0
aso2c53	S. epidermidis	2	2	0	2	0	0
mus5949	S. chromogenes	2	0	0	2	0	0
CNS1	S. simulans	4	2	0	2	0	0
990rr	S. simulans	10	8	0	0	0	0
aso15c106	S. haemolyticus	6	3	0	2	0	0
aso15c28	S. haemolyticus	5	1	0	2	0	0
Cow924RR	S. saprophyticus	0	0	0	7	4	0
aso3c59w	S. warneri	4	3	0	2	0	0
CNS5	S. simulans	4	2	1	6	2	0