Table 1.
N. crassa genes encoding pectinolytic enzymes that are strongly induced by pectin.
| Locus | gene symbol | gene product; (putative) function | CAZy family | SP |
|---|---|---|---|---|
| Backbone-degrading pectinases | ||||
| NCU02369 | gh28-1 | (endo-) polygalacturonase | GH28 | yes |
| NCU06961 | gh28-2 | (exo-) polygalacturonase | GH28 | yes |
| NCU10045 | ce8-1 | pectin methylesterase | CE8 | yes |
| NCU06326 | ply-1 | pectate lyase 1 | PL1 | yes |
| NCU08176 | ply-2 | pectate lyase A | PL3 | yes |
| NCU05598 | asd-1 | rhamnogalacturonase B | PL4 | yes |
| NCU09976 | ce12-1 | rhamnogalacturonan acetylesterase | CE12 | yes |
| NCU02654 | gh105-1 | unsaturated rhamnogalacturonyl hydrolase | GH105 | no |
| Side-chain active enzymes | ||||
| NCU09170 | gh43-4 | α-L-arabinofuranosidase II | GH43 | yes |
| NCU02343 | gh51-1 | α-L-arabinofuranosidase 2 | GH51 | yes |
| NCU09775 | gh54-1 | α-L-arabinofuranosidase | GH54 | yes |
| NCU05965 | gh43-7 | probable endo-arabinanase | GH43 | yes |
| NCU00972 | gh53-1 | arabinogalactan endo-1,4-β-galactosidase | GH53 | yes |
| NCU00642 | gh35-1 | β-galactosidase | GH35 | yes |
| NCU04623 | gh35-2 | β-galactosidase | GH35 | yes |
| NCU00810 | gh2-3 | β-galactosidase | GH2 | no |
| NCU05882 | gh5-5 | endo-β-1,6-galactanase | GH5 | yes |
| NCU00937 | gh79-1 | β-glucuronidase | GH79 | yes |
| NCU09491 | fae-1 | feruloyl esterase B | CE1 | yes |
The corresponding gene loci and names, annotated protein function, respective CAZy family (Cantarel et al., 2009), and the SignalP prediction (SP) (Petersen et al., 2011) are indicated.