Table 3.

Statistical results from RNA sequencing analysis (number and percentage of raw, filtered, and aligned reads). Three replicates (a, b, and c) are shown for each time point (days 5–55).

sample	raw	%	filtered	%	aligned	%
d5a	50,277,367	100	48,847,168	97.2	45,036,342	89.6
d5b	62,438,141	100	60,618,219	97.1	55,916,016	89.6
d5c	42,789,850	100	41,586,412	97.2	38,479,330	89.9
d10a	72,420,225	100	69,364,427	95.8	61,431,613	84.8
d10b	46,641,758	100	44,850,498	96.2	39,812,742	85.4
d10c	85,142,664	100	81,774,580	96.0	71,198,971	83.6
d15a	42,701,829	100	39,342,420	92.1	33,742,148	79.0
d15b	55,919,488	100	51,665,677	92.4	44,507,297	79.6
d15c	98,613,720	100	91,253,129	92.5	78,873,912	80.0
d20a	71,059,794	100	65,828,827	92.6	52,933,436	74.5
d20b	44,455,535	100	41,248,905	92.8	33,195,196	74.7
d20c	54,423,534	100	50,618,077	93.0	40,743,929	74.9
d25a	61,500,744	100	56,010,032	91.1	46,786,403	76.1
d25c	83,670,143	100	76,387,754	91.3	63,785,353	76.2
d30a	74,112,923	100	68,885,120	92.9	59,572,944	80.4
d30b	77,985,515	100	72,428,008	92.9	61,711,555	79.1
d30c	100,671,683	100	93,523,791	92.9	81,026,533	80.5
d35a	67,498,080	100	62,861,610	93.1	54,691,875	81.0
d35b	87,943,727	100	82,007,125	93.2	71,352,895	81.1
d35c	99,568,258	100	92,761,463	93.2	80,856,912	81.2
d40a	135,660,811	100	124,626,322	91.9	107,084,232	78.9
d40b	54,135,432	100	49,929,189	92.2	43,065,040	79.6
d40c	55,241,634	100	51,064,159	92.4	44,214,195	80.0
d45a	67,554,585	100	63,069,990	93.4	53,773,223	79.6
d45b	62,187,743	100	58,293,335	93.7	50,756,256	81.6
d45c	74,873,986	100	70,329,261	93.9	60,877,029	81.3
d55a	74,383,353	100	68,110,555	91.6	56,475,935	75.9
d55b	86,213,964	100	79,106,644	91.8	65,108,144	75.5
d55c	47,160,359	100	43,338,248	91.9	35,914,805	76.2