Table 1.
Statistics of the viral assemblies
| Assembly | Largest contig (bp) | N50 (bp) | # contigs | % chimeric contigs | % reads assembled | % reads assembled on their original genomes | % reads within a viral bacterial hit | Genomes recovered | % contig identity against its original genome (median) |
|---|---|---|---|---|---|---|---|---|---|
| Celera 02 |
15372 |
1729 |
5395 |
15.31 |
31.06 |
96.31 |
0.35 |
0 |
98.32 |
| Celera 05 |
15372 |
2155 |
4216 |
18.43 |
32.4 |
95.97 |
0.35 |
0 |
99.09 |
| Celera meta |
134824 |
4816 |
3165 |
32.10 |
52.47 |
89.80 |
0.14 |
1 |
99.00 |
| Genovo |
138337 |
2357 |
12258 |
18.71 |
98.51 |
78.73 |
0.25 |
0 |
98.00 |
| Minimo 100/98 |
1532 |
744 |
9763 |
4.94 |
3.98 |
94.83 |
8.18 |
0 |
97.63 |
| Minimo 60/95 |
2603 |
471 |
66769 |
2.90 |
37.00 |
97.41 |
3.37 |
0 |
97.00 |
| Newbler 100/98 |
78267 |
1298 |
4405 |
20.69 |
44.41 |
94.63 |
0.38 |
0 |
99.55 |
| Newbler 60/95 |
137947 |
2508 |
7143 |
20.84 |
90.08 |
93.45 |
0.23 |
1 |
99.00 |
| Velvet |
1820 |
426 |
10653 |
4.76 |
4.96 |
95.79 |
6.39 |
0 |
97.42 |
| Meta velvet |
1820 |
426 |
10640 |
4.71 |
4.96 |
95.91 |
6.41 |
0 |
97.00 |
| Optimal | 185683 | 3604 | 10657 | 0.00 | 97.99 | 99.62 | 0.24 | 9 | 100.00 |