Table 2.
Statistics of the viral-bacterial assemblies
| Assembly | Largest contig (bp) | N50 (bp) | # contigs | % chimeric contigs | % viral-bacterial chimeric contigs | % reads assembled | % reads assembled on their original genomes | % reads within a viral bacterial hit | Genomes recovered | % contig identity against its original genome (median) |
|---|---|---|---|---|---|---|---|---|---|---|
| Celera 02 |
20633 |
1646 |
4932 |
14.82 |
0.914 |
24.95 |
96.36 |
0.38 |
0 |
98.63 |
| Celera 05 |
20633 |
1876 |
4616 |
17.20 |
1.17 |
26.97 |
95.88 |
0.38 |
0 |
99.00 |
| Celera meta |
134766 |
2804 |
4630 |
30.65 |
1.99 |
43.08 |
88.36 |
0.17 |
0 |
99.00 |
| Genovo |
139026 |
929 |
33552 |
29.32 |
0.55 |
87.97 |
84.57 |
0.21 |
1 |
98.00 |
| Minimo 100/98 |
1636 |
742 |
7815 |
4.84 |
0.05 |
3.17 |
95.03 |
7.28 |
0 |
98.00 |
| Minimo 60/95 |
3014 |
518 |
61092 |
4.46 |
0.07 |
32.10 |
96.33 |
3.25 |
0 |
97.00 |
| Newbler 100/98 |
75826 |
1130 |
3692 |
19.97 |
1.49 |
30.88 |
94.69 |
0.45 |
0 |
99.52 |
| Newbler 60/95 |
137947 |
1325 |
10643 |
20.70 |
1.15 |
70.29 |
93.51 |
0.27 |
0 |
99.10 |
| Velvet |
1689 |
445 |
18366 |
9.66 |
0.19 |
8.48 |
91.18 |
3.68 |
0 |
97.56 |
| Meta velvet |
1680 |
445 |
18663 |
9.63 |
0.18 |
8.47 |
91.15 |
3.70 |
0 |
97.55 |
| Optimal | 153167 | 1333 | 27166 | 0.00 | 0.00 | 84.31 | 99.71 | 0.32 | 6 | 100.00 |