Table 2. HSF6 CNV intervals identified by both Buddha CGH Pipeline and CGHAnalytics 3.4 platforms.
| Amp/Del | Chr | Locus | Interval start | Interval end | Size | Genes | CNV locus | Variation ID |
|---|---|---|---|---|---|---|---|---|
| Amp | 1 | q21.3 | 149.380005 | 149.399994 | 20 kb | LCE3C | 234 | 1018 |
| Del | 4 | q13.2 | 69.270004 | 69.310005 | 40 kb | 1134 | 1084 | |
| Del | 6 | p21.32 | 32.59 | 32.630001 | 40 kb | HLA-DRB5 | 1673 | new |
| Del | 19 | p12 | 20.42 | 20.49 | 70 kb | 3923 | 10546 | |
| Del | 22 | q11.23 | 22.67 | 22.710001 | 40 kb | GSTT1 | 4208 | 2032 |
Abbreviations: Amp, amplified; Chr, chromosome; CNV, copy number variant; Del, deleted; ID, identification; kb, kilobases.