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. 2014 Feb;20(2):272–275. doi: 10.3201/eid2002.131008

Table 1. Nucleotide divergence for open reading frame sequences between representative West Nile virus strains and other closely related strains from North America, Arizona, USA, 2010*.

Strain Nucleotide divergence (%) from
NY99 Cluster A Cluster B Cluster C
AZ10–581 0.58 0.25–0.52 0.66–0.85 0.61–1.10
AZ10–91 0.66 0.74–1.04 0.49–0.52 0.69–1.16
AZ10–892 0.65 0.84–1.18 0.92–1.04 0.27–0.62

*Strains used for analysis in each cluster are those color coded with representative AZ10 strains and shown in Figure 2, panel B. For cluster A: BSL2–2005 (SD 2005; GenBank accession no. DQ666452), BSL2–09 (NV 2009, JF957175), BSL4–11 (AZ 2011, JQ700438); cluster B: v4530 (NM 2005, HM756677), 144WG-AZ06PI (AZ 2006, GQ507482); cluster C: v4798 (NY 2004, HM756671), BSL3–10 (AZ 2010, JF957186), BSL2–10 (AZ 2010 JF957185), BSL23–11 (AZ 2011, JQ700440).