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. Author manuscript; available in PMC: 2014 Dec 1.
Published in final edited form as: Eur J Med Genet. 2013 Oct 28;56(12):678–682. doi: 10.1016/j.ejmg.2013.09.009
Chromosome 12 3 3
Position 21926358 27763350 27763770
Gene Name KCNJ8 EOMES EOMES
Reference C G G
Number of reads with reference PROBAND 25 29 2
Alternative PROBAND T A C
Number of reads with alternative PROBAND 20 21 3
Number of reads with reference MOTHER 50 46 4
Alternative MOTHER None none C
Number of reads with alternative MOTHER None none 2
Number of reads with reference FATHER 46 17 7
Alternative FATHER None A none
Number of reads with alternative FATHER None none
Mutation type Nonsynonymous SNV Nonsynonymous SNV Nonsynonymous SNV
Refseq ID NM_004982 NM_005442 NM_005442
Mutation DNA (HGVS nomenclature _c) c.193G>A c.436C>T c.16C>G
Mutation DNA (HGVS nomenclature _p) p.V65M p.L146F p.Q6E
Prediction from SIFT, Polyphen2* SIFT 0.00, Polyphen2 0.998 SIFT 0.01, Polyphen2 0.16 SIFT 0.1, Polyphen2 0.929
Sanger Verification YES YES YES
*

SIFT and PolyPhen2 scores are derived from Liu et al. 2011 [2]. SIFT scores <= 0.05 are predicted “damaging” and >0.05 are predicted to be “tolerated”. Polyphen2 scores >=0.2 and <0.85 are considered “possibly damaging” and >= 0.85 are predicted to be “probably damaging”.