Chromosome | 12 | 3 | 3 |
Position | 21926358 | 27763350 | 27763770 |
Gene Name | KCNJ8 | EOMES | EOMES |
Reference | C | G | G |
Number of reads with reference PROBAND | 25 | 29 | 2 |
Alternative PROBAND | T | A | C |
Number of reads with alternative PROBAND | 20 | 21 | 3 |
Number of reads with reference MOTHER | 50 | 46 | 4 |
Alternative MOTHER | None | none | C |
Number of reads with alternative MOTHER | None | none | 2 |
Number of reads with reference FATHER | 46 | 17 | 7 |
Alternative FATHER | None | A | none |
Number of reads with alternative FATHER | None | none | |
Mutation type | Nonsynonymous SNV | Nonsynonymous SNV | Nonsynonymous SNV |
Refseq ID | NM_004982 | NM_005442 | NM_005442 |
Mutation DNA (HGVS nomenclature _c) | c.193G>A | c.436C>T | c.16C>G |
Mutation DNA (HGVS nomenclature _p) | p.V65M | p.L146F | p.Q6E |
Prediction from SIFT, Polyphen2* | SIFT 0.00, Polyphen2 0.998 | SIFT 0.01, Polyphen2 0.16 | SIFT 0.1, Polyphen2 0.929 |
Sanger Verification | YES | YES | YES |
SIFT and PolyPhen2 scores are derived from Liu et al. 2011 [2]. SIFT scores <= 0.05 are predicted “damaging” and >0.05 are predicted to be “tolerated”. Polyphen2 scores >=0.2 and <0.85 are considered “possibly damaging” and >= 0.85 are predicted to be “probably damaging”.