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. Author manuscript; available in PMC: 2015 Feb 5.
Published in final edited form as: J Comput Chem. 2013 Dec 3;35(4):309–312. doi: 10.1002/jcc.23499

Table 2.

Effect of the nature of residue Y on computed 13C′ shielding of A

Ac-GAY-NMea
Yb Δ(φ = −60; ψ = −40)c Δ(φ = −60; ψ = −60)c Δ(φ = −140; ψ = +140)c
Thr 1.0 1.7 0.6
Asp 1.4 0.9 −0.3
Val 0.7 1.5 0.3
Met 0.7 1.1 0.1
Trp 0.4 0.7 0.1
Tyr 0.2 0.2 −0.2 (0.8)d
Gln −1.0 −0.5 −0.3
Pro −2.3 1.1 −1.1
Gly 0.6 1.2 −0.1
a

All the listed results, in terms of Δ, were obtained assuming that the backbone torsional angles (φ,ψ)Y of residue Y are fixed at a canonical α–helix conformation, namely φ = −60° and ψ = −40°. The Δ values were computed as: Δ = (13C′A13C′Y) where 13C′A is the isotropic shielding value of residue A (Ala) in the tripeptide Ac-GAA-NMe, and 13C′Y is the isotropic shielding value of residue A in the tripeptide Ac-GAY-NMe, with the identity of residue Y listed in column 1.

b

Identity (by using a three letter code) of residue Y in the tripeptide Ac-GAY-NMe.

c

The sub index of Δ represents the particular backbone (φ,ψ) torsional angles chosen for the residue A, among all possible ones from the Ramachandran map. Those values for which |Δ| > 0.5 ppm are highlighted in boldface and italics.

d

In parentheses, an alternative value for Δ, (0.8), was computed for a slightly-shifted set of backbone torsional angles, namely (φ = −40°; ψ = +20°) rather than (φ = −40°; ψ = +40°); this result illustrates that the same absolute value of |Δ| computed for Tyr (0.2), in each column of this Table, is just a coincidence, and that the nature of residue Y, matters.