Skip to main content
. Author manuscript; available in PMC: 2015 Jan 1.
Published in final edited form as: Bioorg Med Chem. 2013 Nov 13;22(1):398–405. doi: 10.1016/j.bmc.2013.11.010

Table 2.

Main conformersa of 12a and 27a, calculated by B3LYP/6-311+G(d,p) with PCM in water: energies and geometrical features of the hydrogen bonds.

Conformer Energy (kcal/mol) Carbon chainb Hydrogen bonds Atoms involved dH-Acc (Å) θDon-H-Acc (°)
12a
1 0.00 equat. H(POax) -Oax(P′) 1.82 154
H(POeq)-N 1.68 157
2 0.59 axial H(POax) -Oax(P′) 1.89 154
H(POeq)-N 1.73 155
3 6.50 equat. H(POax) -Oax(P′) 1.86 154
H(N)-Oeq(P) 2.25 139
4 8.49 equat. H(N)-Oeq(P) 2.19 139
27a
1 0.00 equat. H(POax) -Oax(P′) 1.62 161
H(Oax)-N 2.01 124
H(N)-Oeq(P) 2.24 134
2 1.77 equat. H(Oax)-Oeq(P) 1.91 135
H(POeq)-N 1.78 153
3 2.17 axial H(Oeq) -Oax(P) 1.95 133
H(POeq)-N 1.67 157
4 3.75 equat. H(POax) -Oax(P′) 1.62 162
H(Oax)-Oeq(P) 2.82 108
H(N)-Oeq(P) 2.14 142
5 4.86 axial H(POax) -Oax(P′) 1.59 160
H(Oeq)-Oeq(P) 2.25 127
a

For each of the nine H-bond/carbon chain arrangements, the conformer with the orientation of the N-methyl group with lower energy is shown.

b

The designation of substituents as axial or equatorial was made considering the presence of a six-membered cycle formed by the atoms C-1–P-1–O–Mg–O–P-2.