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. 2004 Feb 27;32(4):1414–1421. doi: 10.1093/nar/gkh286

Figure 1.

Figure 1

Construction of homologous sequence pair alignments. (A) Homologous proteins are aligned using an index residue pair obtained from the BLAST output. (B) The alignment is expanded if necessary to include the N-termini of both sequences. Relative to the index residue pair, an N-terminal offset is calculated for the sequences pair and offsets less than or equal to a threshold (50 amino acids) are selected.