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. Author manuscript; available in PMC: 2014 Jan 27.
Published in final edited form as: Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Jan 17;87(1):012710. doi: 10.1103/PhysRevE.87.012710

TABLE I.

Best-fit parameters that yield the model rates (lines) in Fig. 2.

H4 H4-R45H
ΔG30 −40.7 pN nm (−9.9kB T)* −42.0 pN nm (−10.2 kB T)*
ΔG35 −40.7 pN nm (−9.9 kB T)* −42.0 pN nm (−10.2 kB T)*
ΔG40 −21.5 ± 1.3 pN nm (−5.2 ± 0.3kB T) −5.6 ± 2.0 pN nm (−1.4 ± 0. 5kB T)
ΔG45 −34.1 ± 1.6 pN nm (−8.3 ± 0.4kB T) −30.7 ± 1.1 pN nm (−7.5 ± 0.3kB T)
ΔG50 −37.2 ± 2.6 pN nm (−9.1 ± 0.6kB T) −32.6 ± 2.2 pN nm (−7.9 ± 0.5kB T)
ΔG55 0.0 pN nm** 0.0 pN nm**
ΔG60 −6.7 ± 0.5 pN nm (−1.6 ± 0.1kB T) 0.0 pN nm**
ΔG65 −6.7 pN nm (−1.6 kB T)*** 0.0 pN nm**
ΔG70 −6.7 pN nm (−1.6 kB T)*** 0.0 pN nm**
δ 0.82 ± 0.37 bp 2.88 ± 0.33 bp
D 5500 ± 990 bp2s−1**** 5550 ± 990 bp2s−1****
ΔG −128 ± 25 pN nm (32.9 ± 7.3kB T) N.A.
x 8.3 ± 1.7 nm N.A.
*

Parameters constrained to ensure that the unwinding and rewinding rates are equal at F* and equal to each other.

**

Parameters fixed at zero.

***

Fixed equal to ΔG60.

****

Rates for nucleosomes containing H4 and nucleosomes containing H4-R45H were fit simultaneously using the same value of D for both data sets. The quoted errors correspond to the standard errors produced by Mathematica’s NonLinearModelFit via the ParameterErrors property.