. 2013 Sep 25;42(2):e8. doi: 10.1093/nar/gkt865

Table 2.

Sequencing metrics of SI- and LI-WGS libraries for patients 1, 2 and 3

Metric	Patient 1				Patient 2				Patient 3
	SI		LI		SI		LI		SI		LI
Total amount of data generated (GB)	275.6		73.6		285.3		67.4		341.7		74.2
Q30 data generated (GB)	196.5		60.9		261.8		54.2		307.1		60.9

	Normal	Tumor	Normal	Tumor	Normal	Tumor	Normal	Tumor	Normal	Tumor	Normal	Tumor

Number of flowcell lanes sequenced	5	5	1	1	4	4	1	1	4	4	1	1
Read length	102	102	101	101	104	104	101	101	104	104	101	101
Average cluster density (K/mm²)	958.4		756.0		705.9		712.5		819.3		753.5
Average PF cluster density (%)	65.0		84.4		88.0		82.5		92.1		85.3
Total number of reads	1 482 053 066	1 214 032 574	330 467 210	338 562 714	1 512 625 416	1 231 472 418	289 650 634	311 034 636	1 665 626 188	1 617 770 394	402 134 806	270 012 982
Total number of mapped reads	1 387 438 027	1 110 401 730	309 910 146	318 045 021	1 426 314 916	1 158 550 623	270 915 362	289 775 606	1 574 312 575	151 7223 113	376 993 087	253 457 102
% mapped reads	93.62	91.46	93.78	93.94	94.29	94.08	93.53	93.17	94.52	93.78	93.75	93.87
Average mapped sequence coverage^a	45.11	36.10	9.98	10.24	47.28	38.41	8.72	9.33	52.19	50.30	12.14	8.16
Average mapped physical coverage^a	144.48	116.03	83.86	86.20	131.40	108.19	73.38	78.33	146.37	140.13	108.28	72.58

^aSequence and physical coverages were calculated using all data generated. SI libraries were sequenced across five flowcell lanes, whereas LI libraries were sequenced across one flowcell lane.