Table 1. Distribution of E.coli nucleoid proteins in bacterial species.
| Hu/IHF | H-NS/StpA | Dps | Fis | CbpA | DnaA | CbpB | Hfq | IciA/LysR | Lrp/AsnC | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Proteobacteria | γ | Escherichia coli K-12 MG1655 | + | + | + | + | + | + | + | + | + | + |
| Escherichia coli K-12 W3110 | + | + | + | + | + | + | + | + | + | + | ||
| Escherichia coli O157 EDL933 | + | + | + | + | + | + | + | + | + | + | ||
| Escherichia coli O157 Sakai | + | + | + | + | + | + | + | + | + | + | ||
| Escherichia coli CFT073 | + | + | + | + | + | + | + | + | + | + | ||
| Salmonella typhi CT18 | + | + | + | + | + | + | + | + | + | + | ||
| Salmonella typhimurium | + | + | + | + | + | + | + | + | + | + | ||
| Yersinia pestis CO92 | + | + | + | + | − | + | + | + | + | + | ||
| Yersinia pestis KIM | + | + | + | + | − | + | + | + | + | + | ||
| Shigella flexneri 301 (serotype 2a) | + | + | + | + | + | + | + | + | + | + | ||
| Buchnera sp. APS (Acyrthosiphon pisum) | + | + | − | + | − | + | − | − | − | − | ||
| Buchnera aphidicola (Schizaphis graminum) | + | − | − | + | − | + | − | − | + | − | ||
| Buchnera aphidicola (Baizongia pistaciae) | + | − | − | − | − | + | − | − | − | − | ||
| Wigglesworthia brevipalpis | + | + | − | − | − | − | − | + | − | − | ||
| Haemophilus influenzae | + | + | + | + | − | + | − | + | + | + | ||
| Pasteurella multocida | + | + | + | + | − | + | − | + | + | + | ||
| Xylella fastidiosa 9a5c | + | + | + | + | + | + | − | + | + | − | ||
| Xylella fastidiosa Temecula1 | + | + | + | + | + | + | − | + | + | − | ||
| Xanthomonas campestris | + | + | + | + | + | + | − | + | + | + | ||
| Xanthomonas axonopodis | + | + | + | + | + | + | − | + | + | + | ||
| Vibrio cholerae | + | + | + | + | − | + | − | + | + | + | ||
| Vibrio vulnificus | + | + | + | + | − | + | + | + | + | + | ||
| Vibrio parahaemolyticus | + | + | + | + | − | + | − | + | + | + | ||
| Pseudomonas aeruginosa | + | + | + | + | − | + | + | + | + | + | ||
| Shewanella oneidensis | + | + | + | + | − | + | − | + | + | + | ||
| Coxiella burnetii | + | − | − | + | + | + | − | − | − | − | ||
| β | Neisseria meningitidis MC58 (serogroup B) | + | − | − | + | − | + | − | + | + | + | |
| Neisseria meningitidis Z2491 (serogroup A) | + | − | − | + | − | + | − | + | + | + | ||
| Ralstonia solanacearum | + | + | + | + | − | + | + | + | + | + | ||
| δ/ε | Helicobacter pylori 26695 | + | − | + | − | + | + | − | − | − | − | |
| Helicobacter pylori J99 | + | − | + | − | + | + | + | − | − | − | ||
| Campylobacter jejuni | + | − | + | − | + | + | − | − | − | − | ||
| α | Rickettsia prowazekii | + | − | + | − | − | + | − | − | − | − | |
| Rickettsia conorii | + | − | − | − | − | + | − | − | − | − | ||
| Mesorhizobium loti | + | − | − | − | − | + | + | + | + | + | ||
| Sinorhizobium meliloti | + | − | − | − | + | + | + | + | + | + | ||
| Agrobacterium tumefaciens C58 (UWash/Dupont) | + | − | + | − | − | + | + | + | + | + | ||
| Agrobacterium tumefaciens C58 (Cereon) | + | − | + | − | − | + | + | + | + | + | ||
| Brucella melitensis | + | − | + | − | − | + | − | + | + | + | ||
| Brucella suis | + | − | + | − | − | + | − | + | + | + | ||
| Bradyrhizobium japonicum | + | − | + | − | + | + | + | + | + | + | ||
| Caulobacter crescentus | + | − | + | − | − | + | + | + | + | + | ||
| Firmicutes | Bacillales | Bacillus subtilis | + | − | + | − | − | + | + | + | + | + |
| Bacillus halodurans | + | − | + | − | − | + | + | + | + | + | ||
| Bacillus anthracis | + | − | + | − | − | + | + | + | + | + | ||
| Bacillus cereus | + | − | + | − | − | + | + | + | + | + | ||
| Oceanobacillus iheyensis | + | − | + | − | − | + | + | + | + | + | ||
| Staphylococcus aureus N315 (MRSA) | + | − | + | − | − | + | − | + | + | − | ||
| Staphylococcus aureus Mu50 (VRSA) | + | − | + | − | − | + | − | + | + | − | ||
| Staphylococcus aureus MW2 | + | − | + | − | − | + | − | + | + | − | ||
| Staphylococcus epidermidis | + | − | + | − | − | + | − | + | + | − | ||
| Listeria monocytogenes | + | − | + | − | − | + | − | + | + | − | ||
| Listeria innocua | + | − | + | − | − | + | + | + | + | − | ||
| Lactobacillales | Lactococcus lactis | + | − | + | − | − | + | − | − | + | − | |
| Streptococcus pyogenes SF370 (serotype M1) | + | − | + | − | − | + | − | − | + | − | ||
| Streptococcus pyogenes MGAS8232 (serotype M18) | + | − | + | − | − | + | − | − | + | − | ||
| Streptococcus pyogenes MGAS315 (serotype M3) | + | − | + | − | − | + | − | − | + | − | ||
| Streptococcus pneumoniae TIGR4 | + | − | + | − | − | + | − | − | + | − | ||
| Streptococcus pneumoniae R6 | + | − | + | − | − | + | − | − | + | − | ||
| Streptococcus mutans | + | − | + | − | − | + | − | − | + | − | ||
| Lactobacillus plantarum | + | − | + | − | − | + | − | − | + | + | ||
| Enterococcus faecalis | + | − | + | − | − | + | − | − | + | − | ||
| Clostridia | Clostridium acetobutylicum | + | − | − | − | − | + | + | + | + | + | |
| Clostridium perfringens | + | − | − | − | − | + | − | + | + | + | ||
| Clostridium tetani | + | − | − | − | − | + | + | + | + | + | ||
| Thermoanaerobacter tengcongensis | + | − | − | − | − | + | − | + | + | + | ||
| Mollicutes | Mycoplasma genitalium | − | − | − | − | − | + | − | − | − | − | |
| Mycoplasma pneumoniae | − | − | − | − | − | + | − | − | − | − | ||
| Mycoplasma pulmonis | + | − | − | − | − | + | − | − | − | − | ||
| Mycoplasma penetrans | + | − | − | − | − | + | − | − | − | − | ||
| Ureaplasma urealyticum | + | − | − | − | − | + | − | − | − | − | ||
| Actinobacteria | Mycobacterium tuberculosis H37Rv (lab strain) | + | − | − | − | − | + | − | − | + | + | |
| Mycobacterium tuberculosis CDC1551 | + | − | − | − | − | + | − | − | + | + | ||
| Mycobacterium leprae | + | − | − | − | − | + | − | − | + | + | ||
| Corynebacterium glutamicum | − | − | + | − | − | + | − | − | + | + | ||
| Corynebacterium efficiens | − | − | + | − | − | + | − | − | + | + | ||
| Streptomyces coelicolor | + | − | + | − | − | + | + | − | + | + | ||
| Bifidobacterium longum | + | − | + | − | − | + | − | − | + | + | ||
| Tropheryma whipplei Twist | + | − | + | − | + | + | − | − | − | − | ||
| Tropheryma whipplei TW08/27 | + | − | + | − | + | + | − | − | − | − | ||
| Fusobacteria | Fusobacterium nucleatum | + | − | + | − | − | − | − | − | + | − | |
| Chlamydia | Chlamydia trachomatis | + | − | − | − | − | + | − | − | − | − | |
| Chlamydia muridarum | + | − | − | − | − | + | − | − | − | − | ||
| Chlamydophila pneumoniae CWL029 | + | − | − | − | − | + | − | − | − | − | ||
| Chlamydophila pneumoniae AR39 | + | − | − | − | − | + | − | − | − | − | ||
| Chlamydophila pneumoniae J138 | + | − | − | − | − | + | − | − | − | − | ||
| Chlamydophila caviae | + | − | − | − | − | + | − | − | − | − | ||
| Spirochete | Borrelia burgdorferi | + | − | + | − | + | + | − | − | − | − | |
| Treponema pallidum | + | − | + | − | − | + | − | − | − | − | ||
| Leptospira interrogans | + | − | + | − | − | + | − | + | − | − | ||
| Cyanobacteria | Synechocystis sp. PCC6803 | + | − | + | − | + | + | − | − | + | − | |
| Thermosynechococcus elongatus | + | − | + | − | − | + | − | − | + | − | ||
| Anabaena sp. PCC7120 (Nostoc sp. PCC7120) | + | − | + | − | + | + | − | − | + | − | ||
| Green sulfur bacteria | Chlorobium tepidum | + | − | − | − | − | + | − | − | − | + | |
| Radioresistant bacteria | Deinococcus radiodurans | + | − | + | − | − | + | − | − | + | + | |
| Hyperthermophilic bacteria | Aquifex aeolicus | + | − | − | − | − | + | − | + | − | − | |
| Thermotoga maritima | + | − | − | − | − | + | − | + | − | − |
The presence (+) and absence (–) of orthologs [for CbpA, DnaA, CbpB, Dps, HU/IHF (paralogs), Hfq, Fis, H-NS/StpA (paralogs)] or closely related homologs (for IciA/LysR, Lrp/AsnC) in various bacterial species was determined by homolog search (SSDB and the FASTA) in the KEGG databases. It should be noted that H-NS, HU, IHF, StpA and Dps were distributed among many species, whereas CbpA, CbpB, Fis and IciA were detected only in the restricted ones.