Skip to main content
. 2013 Aug 19;31:112–146. doi: 10.3767/003158513X672234

Table 1.

Strains and NCBI GenBank accessions used in phylogenetic analyses.

Taxon Clade Strain Country Substrate GenBank accessions
acl1 rpb2 tef1
Trichoderma olivascens v1 Hypo 273 = CBS 119322 = C.P.K. 2047 UK Fagus sylvatica, wood KC285717 KC285750 DQ672609
C.P.K. 998 Russia soil AY665706
C.P.K. 999 Russia soil AY665707
G.J.S. 05-185 Iran Vitis sylvestris DQ841720
G.J.S. 05-466 UK Fagus sylvatica, stem endophyte KC285598
G.J.S. 05-482 UK Fagus sylvatica, stem endophyte DQ841728
S34 Italy Acer opalus KC285718 KC285751 KC285615
S46 Italy Alnus cordata KC285623
S80 Italy deciduous wood KC285629
S96 Italy Fagus sylvatica KC285630
S105 Italy Fagus sylvatica KC285599
S107 Italy Stereum subtomentosum / Acer obtusatum KC285600
S110 Italy Anthostoma decipiens, Melogramma campylosporum/Carpinus betulus KC285601
S115 Italy Steccherinum ochraceum / Carpinus betulus KC285602
S135 Italy Carpinus betulus KC285603
S140 Italy Carpinus betulus KC285604
S166 Spain (La Palma) Ocotea foetens KC285605
S185 Spain (La Palma) Castanea sativa KC285606
S198 Portugal (Madeira) Ocotea foetens KC285607
S225 Spain (Tenerife) Biscogniauxia sp. / Persea indica KC285608
S233 Spain (Tenerife) Prunus lusitanica KC285609
S289 Croatia Quercus cerris KC285610
S290 Croatia Quercus pubescens KC285611
S294 Croatia Fraxinus ornus KC285612
S329 Spain Fagus sylvatica KC285613
S339 Spain Fraxinus sp. KC285614
S362 France Phyllostachys sp. KC285616
S364 France Hymenochaete corrugata / Corylus avellana KC285617
S405 Spain (Mallorca) Quercus ilex KC285618
S407 Spain (Mallorca) Quercus ilex KC285619
S412 Spain (Mallorca) Quercus ilex KC285620
S428 Spain (La Palma) Laurus novocanariensis KC285621
S457 Spain (La Palma) Laurus novocanariensis KC285622
S475 = CBS 132574; type Spain (Tenerife) Ganoderma applanatum KC285719 KC285752 KC285624
S612 Greece (Corfu) Quercus pubescens KC285625
S616 Greece (Corfu) Corticiaceae / Quercus ilex KC285626
S631 Greece (Corfu) Quercus coccifera KC285627
S632 Greece (Corfu) Quercus ilex KC285628
Trichoderma viridescens v2 CBS 433.34 UK rotten apples AF456905
G.J.S. 99-18 Japan Pinus radiata, wood DQ307519
S1 Italy (Sardinia) Cistus monspeliensis KC285725 KC285757 KC285634
S41 Italy Spartium junceum KC285643
S47 Italy Alnus cordata KC285647
S55a Italy Fraxinus ornus KC285652
S70 Italy Quercus pubescens KC285655
S74 Italy Olea europaea KC285656
S188 Spain (La Palma) Castanea sativa KC285635
S220 Spain (Tenerife) Erica arborea KC285636
S226 Spain (Tenerife) Rumex lunaria KC285637
S244 Spain (Tenerife) Eucalyptus globulus KC285638
S323 Spain Ulex europaeus KC285639
S350 Spain Phyllostachys sp. KC285640
S382 Spain Hedera helix KC285641
S406 Spain (Mallorca) Quercus ilex KC285642
S436 Spain (La Palma) Stereum hirsutum / Malus sp. KC285644
S438 Spain (La Palma) Chamaecytisus proliferus KC285645
S452 = CBS 132573, epitype Spain (La Palma) Chamaecytisus proliferus KC285726 KC285758 KC285646
S471 Spain (Tenerife) Eucalyptus globulus KC285648
S535 Spain Rosmarinus officinalis KC285649
S538 Spain Populus nigra KC285650
S559a France Sarothamnus scoparius KC285651
S588 Greece (Crete) Platanus orientalis KC285653
S607 Greece (Crete) Platanus orientalis KC285654
Tr 4 USA (OR) Pseudotsuga menziesii, root DQ307520
Trichoderma viridarium v3 G.J.S. 04-81 Italy soil DQ841709
G.J.S. 89-142 = CBS 120065 USA (NC) decorticated wood AY376049
G.J.S. 94-118 = IMI 374788 France Carpinus bark DQ307510
G.J.S. 98-129 = CBS 101928 France bark DQ307542
G.J.S. 98-182 = W.J. 1223 = CBS 120067 Austria Carpinus DQ307511
Hypo 234 = CBS 119323 = C.P.K. 2045 Germany Picea abies, wood DQ672607
Hypo 246 = C.P.K. 2046 UK Fagus sylvatica, wood KC285727 KC285759 DQ672608
Hypo 340 = C.P.K. 2139 Germany Fagus sylvatica KC285657
S54 Italy Ostrya carpinifolia KC285663
S95 Italy Fagus sylvatica KC285729 KC285762 KC285665
S136 = CBS 132568; ex-type Italy Carpinus betulus KC285728 KC285760 KC285658
S326 Spain Carpinus betulus KC285659
S345 Spain deciduous wood KC285660
S351 France Quercus robur KC285661
S492 Spain Acacia retinodes KC285761 KC285662
S589 Greece (Crete) Castanea sativa KC285664
Trichoderma paraviridescens v4 ATCC 20898 USA (NY) soil DQ307518
CBS 274.79 Austria wood DQ307513
C.P.K. 891 Austria soil AY665708
G.J.S. 04-202 Switzerland soil DQ841710
G.J.S. 05-115 Switzerland soil FJ463283
G.J.S. 05-144 USA (WI) soil KC285666
G.J.S. 05-172 USA (WI) soil KC285667
G.J.S. 05-464 UK Fagus sylvatica, trunk endophyte DQ841714
Hypo 12 = CBS 119324 = C.P.K. 942 Austria Picea abies KC285668
Hypo 38 = C.P.K. 947 Austria Picea abies DQ672604
Hypo 156 = C.P.K. 2043 Austria Fagus sylvatica DQ672605
Hypo 229 = C.P.K. 2044 Germany Picea abies KC285669
Hypo 372 = CBS 119321 = C.P.K. 2140; type Austria Fagus sylvatica KC285730 KC285763 DQ672610
S16 Italy (Sardinia) Quercus virgiliana KC285732 KC285765 KC285673
S31 Italy Castanea sativa KC285674
S32 Italy Castanea sativa KC285675
S36 Italy Ostrya carpinifolia KC285766 KC285678
S68 Italy Prunus dulcis KC285688
S69 Italy Quercus pubescens KC285689
S111 Italy Carpinus betulus KC285670
S122 = CBS 132566 Italy Hippocrepis emerus KC285731 KC285764 KC285671
S151 Italy Quercus cerris KC285672
S324 Spain ?Castanea sativa KC285676
S327 Spain Datronia mollis / Carpinus betulus KC285677
S374 France Salix caprea KC285679
S375 France Picea abies KC285680
S490 Spain Cytisus linifolius KC285681
S497 Spain Eucalyptus globulus KC285682
S598 Greece (Crete) Juglans regia KC285683
S604 Greece (Crete) Platanus orientalis KC285684
S613 Greece (Corfu) Juglans regia KC285685
S619 Greece (Corfu) Rhytidhysteron rufulum / Hippocrepis emerus KC285686
S626 Greece (Corfu) Ulmus minor KC285687
UNISS104 Italy (Sardinia) soil EF488108
UNISS179 Italy (Sardinia) soil EF488122
UNISS376S = C.P.K. 2069 Italy (Sardinia) soil DQ790657
UNISS3b7 = C.P.K. 2084 Italy (Sardinia) soil DQ790658
VI03691 Norway drinking water AM498517
VI03905 Norway drinking water AM498523
VI03921 Norway drinking water AM498503
VI03928 Norway drinking water AM498505
VI03935 Norway drinking water AM498510
VI03937 Norway drinking water AM498511
VI03962 Norway drinking water AM498513
VI03986 Norway drinking water AM498520
VI03987 Norway drinking water AM498514
VI03988 Norway drinking water AM498515
VI03997 Norway drinking water AM498506
VI03998 Norway drinking water AM498507
Trichoderma virilente v5 DAOM 234234 Guatemala wood EU280009
S108 Italy Hedera helix KC285690
S145 Italy Cistus salviifolius KC285691
S281 = CBS 132569; ex-type Croatia Fraxinus ornus KC285733 KC285767 KC285692
S335 Spain Diatrypaceae / Ulex europaeus KC285693
S517 Spain Calicotome spinosa KC285734 KC285768 KC285694
S520 Spain Pistacia lentiscus KC285735 KC285769 KC285695
S531 Spain Rhamnus frangula ssp. baetica KC285696
S546 Spain Quercus cf. canariensis KC285697
S570 Italy Robinia pseudacacia KC285698
S585 Greece (Crete) Citrus sinensis KC285699
S630 Greece (Corfu) Quercus coccifera KC285700
S635 Greece (Corfu) Cercis siliquastrum KC285701
Trichoderma sp. v6 DAOM 233967 Peru ?soil EU280020
J.B. PER43 Peru soil DQ845420
J.B. PER52 Peru soil DQ845421
PER15-1 Peru ?soil EU280027
Trichoderma trixiae v7 ATCC 32630 = Tr 26 Sweden Fagus wood KC285736 KC285770 DQ307526
DAOM 172787 Colombia? ?soil EU280016
G.J.S. 92-11 = ICMP 16297 New Zealand? Pinus radiata KC285737 KC285771 DQ307524
G.J.S. 99-11 = N.R. 6969 Germany soil DQ841717
CBS 134702 = C.P.K. 2138 = Hypo 228; type Germany Picea abies KC285738 DQ672606
Tr 5 USA (OR) Pseudotsuga menziesii, root infected with Phellinus weirii DQ307525
Tr 6 USA (OR) see Tr 5 AY376050
Trichoderma viridialbum v8 G.J.S. 07-138 Mexico soil KC285702
G.J.S. 07-139 Mexico soil KC285703
G.J.S. 07-145 Mexico soil KC285739 KC285772 KC285704
S177 Spain (La Palma) Sideritis cf. canariensis KC285740 KC285773 KC285705
S250 = CBS 133495; type Spain (Tenerife) Descurainia bourgeauana KC285741 KC285774 KC285706
S429 Spain (La Palma) Erica arborea KC285742 KC285775 KC285707
TU Graz 6TSM1 = C.P.K. 3300 Spain (Tenerife) soil EU871009
VI03958 Norway drinking water AM498519
VI03963 Norway drinking water AM498518
V.S.L. 11 Mexico soil HM535602
V.S.L. 15 Mexico soil HM535601
V.S.L. 16 Mexico soil HM535603
Trichoderma appalachiense v9 G.J.S. 00-67 USA (WV) decorticated wood KC285743 DQ307502
G.J.S. 97-216 USA (VA) decorticated wood KC285708
CBS 133558 = G.J.S. 97-243, ex-type USA (GA) decorticated wood KC285744 DQ307503
Trichoderma neosinense v9a G.J.S. 94-9 Taiwan bark DQ307507
G.J.S. 94-10 Taiwan decorticated wood KC285745 KC285776 DQ307506
CBS 134884 = G.J.S. 94-11; ex-type Taiwan bark KC285746 KC285777 DQ307508
Trichoderma composticola v10 CBS 439.95 Northern Ireland mushroom compost KC285720 KC285753 AY937413
CBS 333.72 Netherlands unknown DQ307523
G.J.S. 04-232 Mexico soil under Agave tequillensis DQ841716
G.J.S. 97-274 = BBA 68432 Russia cardboard DQ307505
CBS 133497 = S590; type Greece (Crete) Vitis vinifera KC285721 KC285754 KC285631
Trichoderma nothescens v10a G.J.S. 99-128 Australia bark DQ307515
CBS 134882 = G.J.S. 99-142; ex-type Australia bark KC285722 DQ307512
G.J.S. 99-86 Australia Eucalyptus regnans DQ307516
Trichoderma sp. J.B. NZ61 New Zealand soil under fern DQ845419
Trichoderma sempervirentis v11 CBS 133498 = S599; type Greece (Crete) Acer sempervirens KC285723 KC285632 KC285755
S601 Greece (Crete) Acer sempervirens KC285724 KC285756 KC285633
Trichoderma sp. DAOM 237554 = JB PER14-1 Peru soil EU280026
Trichoderma sp. VD1 G.J.S. 02-87 Sri Lanka bark DQ307544
G.J.S. 03-151 = CBS 120068 Ghana pyrenomycete DQ841711
Trichoderma vinosum G.J.S. 02-54 = ICMP 16295= CBS 119086 New Zealand Nothofagus menziesii DQ307528
G.J.S. 99-156 = ICMP 16293 Australia bark KC285747 KC285778 DQ307527
G.J.S. 99-158 = ICMP 16294= CBS 119087, type New Zealand Nothofagus menziesii KC285748 KC285779 AY376047
G.J.S. 99-183 Australia bark DQ841719
Trichoderma sp. G.J.S. 97-241 Thailand bamboo KC285709
Hypocrea caerulescens S2 Italy (Sardinia) Cistus monspeliensis JN715602 JN715615
S8 Italy (Sardinia) Alnus glutinosa JN715616
S195 = CBS 130011 Spain (La Palma) Erica arborea KC285710 JN715604 JN715621
S206 = CBS 130012 Portugal (Madeira) Clethra arborea KC285711 JN715605 JN715624
S232 Spain (Tenerife) Erica platycodon KC285712 JN715606 JN715631
Trichoderma koningii Hypo 51 = CBS 119500 = C.P.K. 957 Austria Carpinus betulus KC285713 FJ860541 KC285594
S22 Italy (Sardinia) Myrtus communis? KC285714 KC285749 KC285595
S227 Spain (Tenerife) Castanea sativa JN715609 KC285596
Hypo 242 = C.P.K. 1937 France Fagus sylvatica JN715611
Trichoderma neokoningii G.J.S. 04-216 Peru Moniliophthora roreri / Theobroma cacao DQ841718
Trichoderma samuelsii S5 = CBS 130537 Italy (Sardinia) Hymenochaete sp. / Cistus monspeliensis KC285715 JN715599 JN715655
S42 Italy Quercus pubescens JN715598 JN715652
S398 Spain (Mallorca) Stereum sp. / Quercus ilex JN715654
S537 Spain Phyllostachys sp. KC285716 KC285597
Trichoderma gamsii G.J.S. 05-111 = CBS 120072 Italy (Pisa) Ricinus communis DQ841722
S488 Spain Cytisus linifolius JN715613
Trichoderma sp. VI03967 Norway drinking water AM498521
VI03968 Norway drinking water AM498525
VI03925 Norway drinking water AM498504
VI03945 Norway drinking water AM498508