Table 1.
Strains and NCBI GenBank accessions used in phylogenetic analyses.
| Taxon | Clade | Strain | Country | Substrate | GenBank accessions |
||
|---|---|---|---|---|---|---|---|
| acl1 | rpb2 | tef1 | |||||
| Trichoderma olivascens | v1 | Hypo 273 = CBS 119322 = C.P.K. 2047 | UK | Fagus sylvatica, wood | KC285717 | KC285750 | DQ672609 |
| C.P.K. 998 | Russia | soil | AY665706 | ||||
| C.P.K. 999 | Russia | soil | AY665707 | ||||
| G.J.S. 05-185 | Iran | Vitis sylvestris | DQ841720 | ||||
| G.J.S. 05-466 | UK | Fagus sylvatica, stem endophyte | KC285598 | ||||
| G.J.S. 05-482 | UK | Fagus sylvatica, stem endophyte | DQ841728 | ||||
| S34 | Italy | Acer opalus | KC285718 | KC285751 | KC285615 | ||
| S46 | Italy | Alnus cordata | KC285623 | ||||
| S80 | Italy | deciduous wood | KC285629 | ||||
| S96 | Italy | Fagus sylvatica | KC285630 | ||||
| S105 | Italy | Fagus sylvatica | KC285599 | ||||
| S107 | Italy | Stereum subtomentosum / Acer obtusatum | KC285600 | ||||
| S110 | Italy | Anthostoma decipiens, Melogramma campylosporum/Carpinus betulus | KC285601 | ||||
| S115 | Italy | Steccherinum ochraceum / Carpinus betulus | KC285602 | ||||
| S135 | Italy | Carpinus betulus | KC285603 | ||||
| S140 | Italy | Carpinus betulus | KC285604 | ||||
| S166 | Spain (La Palma) | Ocotea foetens | KC285605 | ||||
| S185 | Spain (La Palma) | Castanea sativa | KC285606 | ||||
| S198 | Portugal (Madeira) | Ocotea foetens | KC285607 | ||||
| S225 | Spain (Tenerife) | Biscogniauxia sp. / Persea indica | KC285608 | ||||
| S233 | Spain (Tenerife) | Prunus lusitanica | KC285609 | ||||
| S289 | Croatia | Quercus cerris | KC285610 | ||||
| S290 | Croatia | Quercus pubescens | KC285611 | ||||
| S294 | Croatia | Fraxinus ornus | KC285612 | ||||
| S329 | Spain | Fagus sylvatica | KC285613 | ||||
| S339 | Spain | Fraxinus sp. | KC285614 | ||||
| S362 | France | Phyllostachys sp. | KC285616 | ||||
| S364 | France | Hymenochaete corrugata / Corylus avellana | KC285617 | ||||
| S405 | Spain (Mallorca) | Quercus ilex | KC285618 | ||||
| S407 | Spain (Mallorca) | Quercus ilex | KC285619 | ||||
| S412 | Spain (Mallorca) | Quercus ilex | KC285620 | ||||
| S428 | Spain (La Palma) | Laurus novocanariensis | KC285621 | ||||
| S457 | Spain (La Palma) | Laurus novocanariensis | KC285622 | ||||
| S475 = CBS 132574; type | Spain (Tenerife) | Ganoderma applanatum | KC285719 | KC285752 | KC285624 | ||
| S612 | Greece (Corfu) | Quercus pubescens | KC285625 | ||||
| S616 | Greece (Corfu) | Corticiaceae / Quercus ilex | KC285626 | ||||
| S631 | Greece (Corfu) | Quercus coccifera | KC285627 | ||||
| S632 | Greece (Corfu) | Quercus ilex | KC285628 | ||||
| Trichoderma viridescens | v2 | CBS 433.34 | UK | rotten apples | AF456905 | ||
| G.J.S. 99-18 | Japan | Pinus radiata, wood | DQ307519 | ||||
| S1 | Italy (Sardinia) | Cistus monspeliensis | KC285725 | KC285757 | KC285634 | ||
| S41 | Italy | Spartium junceum | KC285643 | ||||
| S47 | Italy | Alnus cordata | KC285647 | ||||
| S55a | Italy | Fraxinus ornus | KC285652 | ||||
| S70 | Italy | Quercus pubescens | KC285655 | ||||
| S74 | Italy | Olea europaea | KC285656 | ||||
| S188 | Spain (La Palma) | Castanea sativa | KC285635 | ||||
| S220 | Spain (Tenerife) | Erica arborea | KC285636 | ||||
| S226 | Spain (Tenerife) | Rumex lunaria | KC285637 | ||||
| S244 | Spain (Tenerife) | Eucalyptus globulus | KC285638 | ||||
| S323 | Spain | Ulex europaeus | KC285639 | ||||
| S350 | Spain | Phyllostachys sp. | KC285640 | ||||
| S382 | Spain | Hedera helix | KC285641 | ||||
| S406 | Spain (Mallorca) | Quercus ilex | KC285642 | ||||
| S436 | Spain (La Palma) | Stereum hirsutum / Malus sp. | KC285644 | ||||
| S438 | Spain (La Palma) | Chamaecytisus proliferus | KC285645 | ||||
| S452 = CBS 132573, epitype | Spain (La Palma) | Chamaecytisus proliferus | KC285726 | KC285758 | KC285646 | ||
| S471 | Spain (Tenerife) | Eucalyptus globulus | KC285648 | ||||
| S535 | Spain | Rosmarinus officinalis | KC285649 | ||||
| S538 | Spain | Populus nigra | KC285650 | ||||
| S559a | France | Sarothamnus scoparius | KC285651 | ||||
| S588 | Greece (Crete) | Platanus orientalis | KC285653 | ||||
| S607 | Greece (Crete) | Platanus orientalis | KC285654 | ||||
| Tr 4 | USA (OR) | Pseudotsuga menziesii, root | DQ307520 | ||||
| Trichoderma viridarium | v3 | G.J.S. 04-81 | Italy | soil | DQ841709 | ||
| G.J.S. 89-142 = CBS 120065 | USA (NC) | decorticated wood | AY376049 | ||||
| G.J.S. 94-118 = IMI 374788 | France | Carpinus bark | DQ307510 | ||||
| G.J.S. 98-129 = CBS 101928 | France | bark | DQ307542 | ||||
| G.J.S. 98-182 = W.J. 1223 = CBS 120067 | Austria | Carpinus | DQ307511 | ||||
| Hypo 234 = CBS 119323 = C.P.K. 2045 | Germany | Picea abies, wood | DQ672607 | ||||
| Hypo 246 = C.P.K. 2046 | UK | Fagus sylvatica, wood | KC285727 | KC285759 | DQ672608 | ||
| Hypo 340 = C.P.K. 2139 | Germany | Fagus sylvatica | KC285657 | ||||
| S54 | Italy | Ostrya carpinifolia | KC285663 | ||||
| S95 | Italy | Fagus sylvatica | KC285729 | KC285762 | KC285665 | ||
| S136 = CBS 132568; ex-type | Italy | Carpinus betulus | KC285728 | KC285760 | KC285658 | ||
| S326 | Spain | Carpinus betulus | KC285659 | ||||
| S345 | Spain | deciduous wood | KC285660 | ||||
| S351 | France | Quercus robur | KC285661 | ||||
| S492 | Spain | Acacia retinodes | KC285761 | KC285662 | |||
| S589 | Greece (Crete) | Castanea sativa | KC285664 | ||||
| Trichoderma paraviridescens | v4 | ATCC 20898 | USA (NY) | soil | DQ307518 | ||
| CBS 274.79 | Austria | wood | DQ307513 | ||||
| C.P.K. 891 | Austria | soil | AY665708 | ||||
| G.J.S. 04-202 | Switzerland | soil | DQ841710 | ||||
| G.J.S. 05-115 | Switzerland | soil | FJ463283 | ||||
| G.J.S. 05-144 | USA (WI) | soil | KC285666 | ||||
| G.J.S. 05-172 | USA (WI) | soil | KC285667 | ||||
| G.J.S. 05-464 | UK | Fagus sylvatica, trunk endophyte | DQ841714 | ||||
| Hypo 12 = CBS 119324 = C.P.K. 942 | Austria | Picea abies | KC285668 | ||||
| Hypo 38 = C.P.K. 947 | Austria | Picea abies | DQ672604 | ||||
| Hypo 156 = C.P.K. 2043 | Austria | Fagus sylvatica | DQ672605 | ||||
| Hypo 229 = C.P.K. 2044 | Germany | Picea abies | KC285669 | ||||
| Hypo 372 = CBS 119321 = C.P.K. 2140; type | Austria | Fagus sylvatica | KC285730 | KC285763 | DQ672610 | ||
| S16 | Italy (Sardinia) | Quercus virgiliana | KC285732 | KC285765 | KC285673 | ||
| S31 | Italy | Castanea sativa | KC285674 | ||||
| S32 | Italy | Castanea sativa | KC285675 | ||||
| S36 | Italy | Ostrya carpinifolia | KC285766 | KC285678 | |||
| S68 | Italy | Prunus dulcis | KC285688 | ||||
| S69 | Italy | Quercus pubescens | KC285689 | ||||
| S111 | Italy | Carpinus betulus | KC285670 | ||||
| S122 = CBS 132566 | Italy | Hippocrepis emerus | KC285731 | KC285764 | KC285671 | ||
| S151 | Italy | Quercus cerris | KC285672 | ||||
| S324 | Spain | ?Castanea sativa | KC285676 | ||||
| S327 | Spain | Datronia mollis / Carpinus betulus | KC285677 | ||||
| S374 | France | Salix caprea | KC285679 | ||||
| S375 | France | Picea abies | KC285680 | ||||
| S490 | Spain | Cytisus linifolius | KC285681 | ||||
| S497 | Spain | Eucalyptus globulus | KC285682 | ||||
| S598 | Greece (Crete) | Juglans regia | KC285683 | ||||
| S604 | Greece (Crete) | Platanus orientalis | KC285684 | ||||
| S613 | Greece (Corfu) | Juglans regia | KC285685 | ||||
| S619 | Greece (Corfu) | Rhytidhysteron rufulum / Hippocrepis emerus | KC285686 | ||||
| S626 | Greece (Corfu) | Ulmus minor | KC285687 | ||||
| UNISS104 | Italy (Sardinia) | soil | EF488108 | ||||
| UNISS179 | Italy (Sardinia) | soil | EF488122 | ||||
| UNISS376S = C.P.K. 2069 | Italy (Sardinia) | soil | DQ790657 | ||||
| UNISS3b7 = C.P.K. 2084 | Italy (Sardinia) | soil | DQ790658 | ||||
| VI03691 | Norway | drinking water | AM498517 | ||||
| VI03905 | Norway | drinking water | AM498523 | ||||
| VI03921 | Norway | drinking water | AM498503 | ||||
| VI03928 | Norway | drinking water | AM498505 | ||||
| VI03935 | Norway | drinking water | AM498510 | ||||
| VI03937 | Norway | drinking water | AM498511 | ||||
| VI03962 | Norway | drinking water | AM498513 | ||||
| VI03986 | Norway | drinking water | AM498520 | ||||
| VI03987 | Norway | drinking water | AM498514 | ||||
| VI03988 | Norway | drinking water | AM498515 | ||||
| VI03997 | Norway | drinking water | AM498506 | ||||
| VI03998 | Norway | drinking water | AM498507 | ||||
| Trichoderma virilente | v5 | DAOM 234234 | Guatemala | wood | EU280009 | ||
| S108 | Italy | Hedera helix | KC285690 | ||||
| S145 | Italy | Cistus salviifolius | KC285691 | ||||
| S281 = CBS 132569; ex-type | Croatia | Fraxinus ornus | KC285733 | KC285767 | KC285692 | ||
| S335 | Spain | Diatrypaceae / Ulex europaeus | KC285693 | ||||
| S517 | Spain | Calicotome spinosa | KC285734 | KC285768 | KC285694 | ||
| S520 | Spain | Pistacia lentiscus | KC285735 | KC285769 | KC285695 | ||
| S531 | Spain | Rhamnus frangula ssp. baetica | KC285696 | ||||
| S546 | Spain | Quercus cf. canariensis | KC285697 | ||||
| S570 | Italy | Robinia pseudacacia | KC285698 | ||||
| S585 | Greece (Crete) | Citrus sinensis | KC285699 | ||||
| S630 | Greece (Corfu) | Quercus coccifera | KC285700 | ||||
| S635 | Greece (Corfu) | Cercis siliquastrum | KC285701 | ||||
| Trichoderma sp. | v6 | DAOM 233967 | Peru | ?soil | EU280020 | ||
| J.B. PER43 | Peru | soil | DQ845420 | ||||
| J.B. PER52 | Peru | soil | DQ845421 | ||||
| PER15-1 | Peru | ?soil | EU280027 | ||||
| Trichoderma trixiae | v7 | ATCC 32630 = Tr 26 | Sweden | Fagus wood | KC285736 | KC285770 | DQ307526 |
| DAOM 172787 | Colombia? | ?soil | EU280016 | ||||
| G.J.S. 92-11 = ICMP 16297 | New Zealand? | Pinus radiata | KC285737 | KC285771 | DQ307524 | ||
| G.J.S. 99-11 = N.R. 6969 | Germany | soil | DQ841717 | ||||
| CBS 134702 = C.P.K. 2138 = Hypo 228; type | Germany | Picea abies | KC285738 | DQ672606 | |||
| Tr 5 | USA (OR) | Pseudotsuga menziesii, root infected with Phellinus weirii | DQ307525 | ||||
| Tr 6 | USA (OR) | see Tr 5 | AY376050 | ||||
| Trichoderma viridialbum | v8 | G.J.S. 07-138 | Mexico | soil | KC285702 | ||
| G.J.S. 07-139 | Mexico | soil | KC285703 | ||||
| G.J.S. 07-145 | Mexico | soil | KC285739 | KC285772 | KC285704 | ||
| S177 | Spain (La Palma) | Sideritis cf. canariensis | KC285740 | KC285773 | KC285705 | ||
| S250 = CBS 133495; type | Spain (Tenerife) | Descurainia bourgeauana | KC285741 | KC285774 | KC285706 | ||
| S429 | Spain (La Palma) | Erica arborea | KC285742 | KC285775 | KC285707 | ||
| TU Graz 6TSM1 = C.P.K. 3300 | Spain (Tenerife) | soil | EU871009 | ||||
| VI03958 | Norway | drinking water | AM498519 | ||||
| VI03963 | Norway | drinking water | AM498518 | ||||
| V.S.L. 11 | Mexico | soil | HM535602 | ||||
| V.S.L. 15 | Mexico | soil | HM535601 | ||||
| V.S.L. 16 | Mexico | soil | HM535603 | ||||
| Trichoderma appalachiense | v9 | G.J.S. 00-67 | USA (WV) | decorticated wood | KC285743 | DQ307502 | |
| G.J.S. 97-216 | USA (VA) | decorticated wood | KC285708 | ||||
| CBS 133558 = G.J.S. 97-243, ex-type | USA (GA) | decorticated wood | KC285744 | DQ307503 | |||
| Trichoderma neosinense | v9a | G.J.S. 94-9 | Taiwan | bark | DQ307507 | ||
| G.J.S. 94-10 | Taiwan | decorticated wood | KC285745 | KC285776 | DQ307506 | ||
| CBS 134884 = G.J.S. 94-11; ex-type | Taiwan | bark | KC285746 | KC285777 | DQ307508 | ||
| Trichoderma composticola | v10 | CBS 439.95 | Northern Ireland | mushroom compost | KC285720 | KC285753 | AY937413 |
| CBS 333.72 | Netherlands | unknown | DQ307523 | ||||
| G.J.S. 04-232 | Mexico | soil under Agave tequillensis | DQ841716 | ||||
| G.J.S. 97-274 = BBA 68432 | Russia | cardboard | DQ307505 | ||||
| CBS 133497 = S590; type | Greece (Crete) | Vitis vinifera | KC285721 | KC285754 | KC285631 | ||
| Trichoderma nothescens | v10a | G.J.S. 99-128 | Australia | bark | DQ307515 | ||
| CBS 134882 = G.J.S. 99-142; ex-type | Australia | bark | KC285722 | DQ307512 | |||
| G.J.S. 99-86 | Australia | Eucalyptus regnans | DQ307516 | ||||
| Trichoderma sp. | J.B. NZ61 | New Zealand | soil under fern | DQ845419 | |||
| Trichoderma sempervirentis | v11 | CBS 133498 = S599; type | Greece (Crete) | Acer sempervirens | KC285723 | KC285632 | KC285755 |
| S601 | Greece (Crete) | Acer sempervirens | KC285724 | KC285756 | KC285633 | ||
| Trichoderma sp. | DAOM 237554 = JB PER14-1 | Peru | soil | EU280026 | |||
| Trichoderma sp. VD1 | G.J.S. 02-87 | Sri Lanka | bark | DQ307544 | |||
| G.J.S. 03-151 = CBS 120068 | Ghana | pyrenomycete | DQ841711 | ||||
| Trichoderma vinosum | G.J.S. 02-54 = ICMP 16295= CBS 119086 | New Zealand | Nothofagus menziesii | DQ307528 | |||
| G.J.S. 99-156 = ICMP 16293 | Australia | bark | KC285747 | KC285778 | DQ307527 | ||
| G.J.S. 99-158 = ICMP 16294= CBS 119087, type | New Zealand | Nothofagus menziesii | KC285748 | KC285779 | AY376047 | ||
| G.J.S. 99-183 | Australia | bark | DQ841719 | ||||
| Trichoderma sp. | G.J.S. 97-241 | Thailand | bamboo | KC285709 | |||
| Hypocrea caerulescens | S2 | Italy (Sardinia) | Cistus monspeliensis | JN715602 | JN715615 | ||
| S8 | Italy (Sardinia) | Alnus glutinosa | JN715616 | ||||
| S195 = CBS 130011 | Spain (La Palma) | Erica arborea | KC285710 | JN715604 | JN715621 | ||
| S206 = CBS 130012 | Portugal (Madeira) | Clethra arborea | KC285711 | JN715605 | JN715624 | ||
| S232 | Spain (Tenerife) | Erica platycodon | KC285712 | JN715606 | JN715631 | ||
| Trichoderma koningii | Hypo 51 = CBS 119500 = C.P.K. 957 | Austria | Carpinus betulus | KC285713 | FJ860541 | KC285594 | |
| S22 | Italy (Sardinia) | Myrtus communis? | KC285714 | KC285749 | KC285595 | ||
| S227 | Spain (Tenerife) | Castanea sativa | JN715609 | KC285596 | |||
| Hypo 242 = C.P.K. 1937 | France | Fagus sylvatica | JN715611 | ||||
| Trichoderma neokoningii | G.J.S. 04-216 | Peru | Moniliophthora roreri / Theobroma cacao | DQ841718 | |||
| Trichoderma samuelsii | S5 = CBS 130537 | Italy (Sardinia) | Hymenochaete sp. / Cistus monspeliensis | KC285715 | JN715599 | JN715655 | |
| S42 | Italy | Quercus pubescens | JN715598 | JN715652 | |||
| S398 | Spain (Mallorca) | Stereum sp. / Quercus ilex | JN715654 | ||||
| S537 | Spain | Phyllostachys sp. | KC285716 | KC285597 | |||
| Trichoderma gamsii | G.J.S. 05-111 = CBS 120072 | Italy (Pisa) | Ricinus communis | DQ841722 | |||
| S488 | Spain | Cytisus linifolius | JN715613 | ||||
| Trichoderma sp. | VI03967 | Norway | drinking water | AM498521 | |||
| VI03968 | Norway | drinking water | AM498525 | ||||
| VI03925 | Norway | drinking water | AM498504 | ||||
| VI03945 | Norway | drinking water | AM498508 | ||||