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. Author manuscript; available in PMC: 2014 Aug 1.
Published in final edited form as: Proteins. 2013 Apr 22;81(8):1318–1329. doi: 10.1002/prot.24272

Figure 3.

Figure 3

Prediction accuracy for DNA-bound water (a, water that directly contacts the DNA bases) and bridging water (b, water that interacts with both DNA and protein) from simulations with 3-site (‘3W’) and single-site (‘1W’) waters with a range of entropy parameters. The fraction of modeled waters that overlap with crystal waters (x-axis, 1.4Å distance threshold) is plotted against the fraction of crystal waters that overlap with modeled water (y-axis, same threshold). Recovery is averaged across all models for each member of the full benchmark set.