Table 1. PRORP enzymes are less catalytically efficient than RNP-based RNase Ps in vitro.
Species | Composition | kcat (sec-1) | Km (nM) | kcat/Km (M-1 sec-1) | Fold (kcat/Km) |
---|---|---|---|---|---|
B. subtilisa | RNP | 1 | 230 | 4 × 106 | 40 |
Nuclear S. cerevisiaeb |
RNP | 2 | 20 | 1 × 108 | 1,000 |
Mito/Chloro A. thaliana PRORP1c |
Protein | 0.1 | 850 | 1 × 105 | 1 |
A comparison of the catalytic efficiencies (kcat/Km) for RNase P enzymes that have been kinetically characterized reveal that PRORP enzymes may be up to several orders of magnitude less efficient. Values reported are from reactions performed at 37°C in the pH range of 7.8–8.0 with respective species specific pre-tRNAs containing 35 nt:CCA, 12 nt:0 nt and 5 nt:1 nt leader to trailer ratios for B. subtilis, S. cerevisiae and A. thaliana, respectively. Reactions performed with RNP-based RNase P contain higher concentrations of magnesium in order to correctly fold and stabilize the large catalytic RNA. a(24) b(22) c [Unpublished results which are comparable to PRORP3 kinetic parameters in (9)] Numbers reported are rounded.