BAM |
Binary SAM, Sequence Alignment/Map format (Sect. 2.1) |
GLF |
Genotype Likelihood Format (Sects. 2, 3.2.1) |
GWAS |
Genome-wide Association Studies (abstract, Sect. 1) |
HTS |
High Throughput Sequencing (Sect. 1) |
Kb |
Kilobase (Sect. 1) |
LD |
Linkage Disequilibrium (Sects. 1, 3.3.2) |
MPS |
Massively Parallel Sequencing |
MS-LD* |
Multi-Sample Linkage Disequilibrium genotype calling method (Sect. 3.3.2) |
MS-SS* |
Multi-Sample Single-Site genotype calling method (Sect. 3.3.1) |
NGS |
Next Generation Sequencing (Sect. 1) |
SAM |
Sequence Alignment/Map format (Sect. 2.1) |
SNP |
Single Nucleotide Polymorphism |
SS* |
Single-Sample genotype calling method (Sect. 3.2) |
VCF |
Variant Call Format (Sect. 2) |