Table 2.
Entry | Modified region | RNA sequences | Tm (°C) | ΔTm (°C) |
---|---|---|---|---|
1 | (5′-rUUAUAUAUAUAUAA-3′)2 | 38.0 ± 0.3 | ||
2 | Duplex | (5′-rUUA-SeU-AUAUAUAUAA-3′)2 | 37.3 ± 0.5 | −0.7 |
3 | (5′-rGGUAUUGCGGUACC-3′)2 | 45.0 ± 0.4 | ||
4 | Duplex | (5′-rGG-SeU-AUUGCGGUACC-3′)2 | 44.2 ± 0.3 | −0.8 |
5 | (5′-rCGCGAAUUCGCG-3′)2 | 39.4 ± 0.4 | ||
6 | Duplex | (5′-rCGCGAAU-SeU-CGCG-3′)2 | 39.0 ± 0.3 | −0.4 |
7 | 5′-AUCACCUCCUUA-3′ | 43.2 ± 0.3 | ||
3′-UAGUGGAGGAAU-5′ | ||||
8 | Duplex | 5′-A-SeU-CACCUCCUUA-3′ | 42.8 ± 0.4 | −0.4 |
3′-U–A–GUGGAGGAAU-5′ | ||||
9 | (5′-UUAGCUAGCU-3′)2 | 42.2 ± 0.2 | ||
10 | Duplex junction | (5′-U-SeU-AGCUAGCU-3′)2 | 47.1 ± 0.3 | +4.9 |
11 | (5′-UUCGCGAUCGCG-3′)2 | 59.4 ± 0.3 | ||
12 | Duplex junction | (5′-U-SeU-CGCGAUCGCG-3′)2 | 63.2 ± 0.3 | +3.8 |
13 | 5′-UUCAUGUGACC-3′ | 48.2 ± 0.3 | ||
3′—–GUACACUGGUU-5′ | ||||
14 | Duplex junction | 5′-U-SeU-CAUGUGACC-3′ | 49.9 ± 0.4 | +1.7 |
3′——–GUACACUGGUU-5′ |