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. 2014 Jan 29;9(1):e86993. doi: 10.1371/journal.pone.0086993

Figure 2. Comparison of the repeat handling methods.

Figure 2

The prediction error (mean absolute deviation around the predicted rates) in the two repeat handling methods for 29 samples at different depths of coverage. RM_LOESS (blue) is the protocol where RepeatMasker regions are filtered and mapCorr_LOESS (green) is where mappability is quantified and read counts are corrected.