Table 1. Estimated QTL effects from the full model for the number of panicles per plant.

Loci(i, j)a	b	p-valuec	d	Loci(i, j)		p-value
(757_add, 757_add)	−0.12(0.04)	2.16×10−3	0.0030	(104_dom, 732_add)	−0.11(0.05)	9.54×10−3	0.0012
7_add, 220_dom)	0.20(0.06)	2.39×10−4	0.0032	(186_dom, 735_add)	−0.20(0.06)	1.72×10−4	0.0039
(10_add, 887_dom)	−0.25(0.05)	3.78×10−6	0.0061	(518_dom, 759_add)	−0.27(0.06)	1.64×10−6	0.0075
(18_add, 1407_dom)	0.28(0.06)	1.45×10−6	0.0080	(220_dom, 784_add)	0.23(0.06)	2.38×10−5	0.0045
(20_add, 1026_dom)	0.27(0.06)	1.82×10−6	0.0060	(561_dom, 828_add)	−0.36(0.05)	4.88×10−12	0.0140
(44_add, 532_dom)	−0.27(0.05)	1.16×10−7	0.0071	(861_add, 918_add)	0.41(0.05)	1.11×10−15	0.0182
(69_add, 913_dom)	0.21(0.05)	2.39×10−5	0.0040	(904_add, 1113_dom)	0.33(0.05)	3.50×10−10	0.0098
(123_add, 1132_add)	0.23(0.05)	7.78×10−7	0.0053	(213_dom, 929_add)	0.27(0.05)	4.85×10−8	0.0076
(166_add, (684_add)	0.46(0.04)	<10−15	0.0279	(967_add, 1515_add)	0.20(0.05)	2.91×10−5	0.0040
(186_add, 1372_add)	−0.11(0.04)	2.86×10−3	0.0013	(908_dom, 994_add)	0.90(0.05)	<10−15	0.0782
(192_add, 580_add)	−0.11(0.04)	8.35×10−3	0.0013	(1026_add, 1173_add)	0.21(0.05)	9.05×10−6	0.0044
(199_add, 782_dom)	−0.08(0.03)	2.53×10−3	0.0006	(1037_add, 1510_add)	0.14(0.05)	1.13×10−3	0.0018
(208_add, 309_add)	−0.31(0.05)	1.50×10−9	0.0092	(1089_dom, 1096_add)	0.34(0.12)	2.17×10−3	0.0016
(227_add, 364_dom)	−0.36(0.05)	3.18×10−12	0.0145	(1119_add, 1471_add)	−0.19(0.04)	1.29×10−5	0.0045
(244_add, 1303_dom)	−0.11(0.04)	5.10×10−3	0.0012	(229_dom, 1160_add)	−0.11(0.04)	5.70×10−3	0.0012
(249_add, 417_dom)	0.12(0.04)	3.14×10−3	0.0015	(1208_add, 1583_dom)	−0.14(0.05)	3.20×10−3	0.0015
(333_add, 991_add)	0.24(0.05)	3.92×10−7	0.0057	(64_dom, 1223_add)	−0.43(0.05)	2.22×10−15	0.0191
(335_add, 372_add)	0.20(0.05)	2.05×10−5	0.0041	(1237_add, 1370_add)	0.54(0.05)	<10−15	0.0279
(349_add, 1425_dom)	−0.23(0.05)	3.20×10−6	0.0060	(1334_add, 1576_add)	0.22(0.05)	2.94×10−6	0.0049
(354_add, 358_dom)	−0.50(0.05)	<10−15	0.0233	(408_dom, 1356_add)	−0.73(0.05)	<10−15	0.0488
(371_dom, 381_add)	0.37(0.05)	6.01×10−11	0.0113	(1065_dom, 1394_add)	−0.17(0.05)	1.55×10−4	0.0026
(421_add, 1079_add)	−0.15(0.04)	1.04×10−4	0.0023	(981_dom, 1558_add)	−0.79(0.05)	<10−15	0.0735
(456_add, 1282_add)	0.38(0.05)	9.99×10−15	0.0167	(1094_dom, 1558_add)	0.21(0.05)	4.05×10−5	0.0046
(517_add, 1346_add)	−0.10(0.04)	8.46×10−3	0.0009	(1217_dom,1615_add)	0.37(0.05)	5.88×10−13	0.0144
(520_add,595_dom)	−0.37(0.05)	4.03×10−11	0.0109	(54_dom, 1117_dom)	0.27(0.05)	3.96×10−7	0.0052
(15_dom, 534_add)	0.47(0.05)	<10−15	0.0246	(627_dom, 681_dom)	−0.25(0.05)	1.05×10−6	0.0048
(649_add, 1364_add)	−0.20(0.04)	3.80×10−6	0.0045	(786_dom, 810_dom)	0.15(0.05)	1.11×10−3	0.0021
Parameter(s)				a = 0.5, b = 0.5
μ				0.0035
				0.1444
				0.9405

^aadd: additive effect; dom: dominance effect. If i equals j, then it is a main effect, otherwise, it is an interaction between locus i and locus j. Total number of effects is 112, only 54 effects with a p-value ≤0.01 are listed in this table.

^bThe estimated marker effect is denoted by and the standard deviation is denoted by .

^c P-value is obtained via t-test.

^dPhenotypic variation explained.