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. 2014 Jan 29;9(1):e87628. doi: 10.1371/journal.pone.0087628

Table 4. QTLs identified in the B73 x IL14H population.

El Chm Pos (cM) LOD MI Start MI Stop R2 SumR2 Add.Eff PT Co Nearest marker
B 3 123.5 3.3 121.9 129.8 0.08 0.13 −58.93 2.5 7 PZB01457.1
B 5 13.3 2.5 13.3 13.3 0.05 0.13 −51.74 2.5 7 PHM13122.43
Cd 2 84.2 17.4 63.0 102.8 0.38 0.38 −0.02 2.6 1 PZA00495.5
Co 1 193.1 2.9 190.0 193.1 0.06 0.15 0.00 2.4 10 PZA00235.9
Co 5 23.2 3.2 13.3 29.1 0.10 0.15 0.00 2.4 10 PZA01925.1
Cu 2 94.5 4.3 88.6 100.0 0.09 0.24 −0.22 2.8 10 PZA01735.1
Cu 4 56.6 3.1 56.0 59.9 0.06 0.24 −0.20 2.8 10 PZA00218.1
Cu 8 80.6 4.5 74.1 86.8 0.10 0.24 0.23 2.8 10 PZA03698.1
K 4 54.9 5.0 49.7 59.9 0.15 0.15 −478.96 2.7 7 PZA01751.2
Mn 1 34.3 4.1 33.9 35.7 0.06 0.57 −0.91 2.8 10 PZA01030.1
Mn 1 89.1 14.4 73.4 106.0 0.30 0.57 −1.45 2.8 10 PZA02135.2
Mn 3 91.8 5.1 83.6 97.9 0.10 0.57 0.91 2.8 10 PZA03735.1
Mn 5 7.2 3.4 7.2 10.3 0.05 0.57 0.61 2.8 10 PZA01438.1
Mn 5 40.8 3.6 34.7 49.2 0.06 0.57 −0.66 2.8 10 PZA01284.6
Mo 1 53.9 3.0 50.6 53.9 0.05 0.33 −0.01 2.8 10 PZA02686.1
Mo 1 147.4 14.6 129.8 155.8 0.29 0.33 −0.03 2.8 10 PZA02269.3.4
Na 5 13.3 3.0 10.3 21.2 0.06 0.14 −25.24 2.5 10 PHM13122.43
Na 5 43.7 3.7 36.8 49.2 0.08 0.14 29.13 2.5 10 PZA01327.1
Ni 1 149.9 8.7 136.2 163.7 0.15 0.35 0.06 2.7 10 PZA02269.3.4
Ni 2 91.7 3.4 70.5 100.0 0.06 0.35 −0.04 2.7 10 PZA01735.1
Ni 4 56.6 3.3 56.0 59.9 0.06 0.35 0.04 2.7 10 PZA00218.1
Ni 5 71.2 3.6 60.7 84.6 0.08 0.35 0.04 2.7 10 PZA03536.1
P 4 53.9 4.0 52.4 56.6 0.08 0.13 −191.73 2.7 10 PZA01751.2
P 6 33.4 3.0 33.4 35.1 0.05 0.13 −127.55 2.7 10 PZA03461.1
Rb 3 119.9 2.6 118.0 121.9 0.05 0.25 −0.23 2.4 10 PZA02516.1
Rb 4 127.1 2.6 127.1 127.1 0.05 0.25 0.24 2.4 10 PZA03322.5.3
Rb 5 101.2 3.0 101.2 104.5 0.05 0.25 −0.27 2.4 10 PZA02411.3
Rb 8 29.6 5.4 17.5 41.2 0.10 0.25 0.34 2.4 10 PZA03178.1
S 1 161.7 4.1 151.9 173.5 0.09 0.09 −117.13 2.5 9 PZA02698.3
Zn 5 99.3 5.5 91.7 109.5 0.12 0.21 −2.51 2.3 7 PZA02411.3
Zn 7 132.4 3.8 123.1 132.4 0.09 0.21 2.12 2.3 7 PZA01744.1

El: Element. Chm: Chromosome. Pos: Position of QTL in cM. LOD: LOD score. MI Start and Stop: the mapping intervals defining where the LOD trace crossed the 95% permutation threshold. R2: the fraction of variance accounted for by the QTL, Sum R2: The cumulative fraction of variance accounted for by all of the QTLs for the element. Add.eff: The additive effect of the QTL in PPM. PT: the 95% permutation threshold from 1000 permutations. CO: number of cofactors used in the model. Nearest Marker: The nearest marker.