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. 2014 Jan 29;9(1):e87499. doi: 10.1371/journal.pone.0087499

Table 3. Specific short DNA sequences found to be statistically enriched in the promoters of module member genes.

Module DNA Element Number of Hits Number of Promoters FDR
Module 01 TTAAAAA 346 267 4.94E-08
TTTAAAA 301 197 1.71E-07
CTCGTC 423 342 3.52E-05
ACGTGGGC 139 120 6.03E-05
CGGCC 380 299 4.80E-05
Module 02 CAACGGTC 57 48 3.79E-17
AACGGCT 90 79 1.02E-09
AGCCGTTG 47 39 2.43E-09
CCAACGG 121 104 2.43E-08
CAACGGC 115 98 5.38E-05
Module 04 AAACCCT 311 248 2.02E-69
AGCCCAA 161 134 1.86E-14
AGGCCCA 211 169 1.02E-28
AAGCCCAT 57 50 2.57E-11
GCCCAAC 115 100 1.86E-08
Module 05 ACAAAA 550 345 2.00E-05
CAATA 617 368 7.05E-08
ACAATA 197 151 4.04E-05
ACAATAA 80 71 6.02E-06
AATAA 1078 463 1.71E-05
Module 06 GAACCTTC 33 30 3.47E-15
CTAGAAG 55 46 9.78E-11
CTTCCAGA 28 26 3.98E-10
AAGCTTC 61 40 1.01E-07
GAAGCTTC 20 20 1.04E-06
Module 07 ACGTGGC 69 55 4.83E-12
CCACGTC 59 53 1.39E-07
GACGTGGC 25 21 5.88E-06
CACGTGGC 26 20 1.27E-06
CCTATC 92 81 1.12E-09
GGGATA 83 78 7.11E-07
AGATAA 126 105 0.00026
Module 09 ACGTAT 50 32 3.91E-05
ACGTATA 23 14 1.14E-05
ACACGTA 31 28 1.38E-06
CACGTAC 36 28 1.29E-05
CGTAA 118 83 0.000276
Module 10 CGATCG 47 35 0.00227
CCGATCG 28 18 0.00049
ATCGC 122 83 0.00424
Module 12 GTACGTA 27 13 6.08E-06
GTACAC 41 36 1.44E-05
ACGTACG 27 14 2.08E-05