Table 3.

Read-depth coverage in the whole dataset and in the significant sets of exons

	Single-copy			Duplicated			All
	HS	MMU	Both	HS	MMU	Both	HS	MMU	Both
Initial set (178,295 exons)
Exon	4.18	4.23	8.41	17.16	11.53	28.69	4.96	4.66	9.62
Intron	4.19	3.94	8.13	16.84	10.82	27.67	4.95	4.35	9.29
Total	4.2	4.03	8.23	17	11.16	28.16	4.96	4.45	9.42
Significant set (74 exons)
Exon	4.23	7.38	11.61	36.39	24.04	60.43	22.05	16.61	38.66
Intron	4.17	5.66	9.83	35.22	18.75	53.97	21.37	12.91	34.29
Total	4.16	6.01	10.18	35.96	20.01	55.97	21.78	13.77	35.55

Coverage is defined as the average number of high-quality reads aligned per nucleotide. HS corresponds to the human reads, while MMU to macaque reads.