Table 1. Classification of abundant tunic OTUs.
OTU# | Isolate | RDP classification class/genus |
Closest uncultured and cultured BLAST hits |
|||
---|---|---|---|---|---|---|
Acc. # | Source | Max. Id (%) | ||||
1* | CWH016 | Flavobacteria/Arenibacter | DQ486485 | Arenibacter sp. DG1238 | Dinoflagellate | 95 |
2* | — | Alphaprot./unclassified1 | HQ326311 DQ167245 | Uncultured clone SBS-RV-031 Kopriimonas byunsanensis KOPRI 13522 | Biofilm Marine biofilm | 99 88 |
3* | CWH001 | Alphaprot./Kordiimonas | EU287361 GU289640 | Uncultured bacterium clone S26–61 Kordiimonas sp. MEBiC06554 | Arctic sediment Seawater | 99 96 |
4 | — | Alphaprot./unclassified2 | HQ163356 JQ085424 | Uncultured Alphaprot. SHZW738 alphaproteobacterium NH6–42 | Seawater Seawater | 92 85 |
8* | CWH003 | Alphaprot./Kiloniella | EU287341 AB571945 | Uncultured bacterium clone S26–41 Alphaproteobacterium AKA07–5 | Arctic sediment − | 99 96 |
10 | — | Alphaprot./Breoghania | FJ543036 GQ272328 | Uncultured Alphaprot. B07–10D Alphaproteobacterium UBF-P1 | Earthworm gut Sand after oil spill | 88 86 |
7* | CWH007 | Flavobacteria/Muricauda | FJ203619 FJ348472 | Uncultured bacterium clone SHFH709 Flavobacteriaceae bacterium A9 | Coral Marine sponge | 98 97 |
11 | — | Gammaprot./Escherichia | KC002412 JX120100 | Marine bacterioplankton clone P4-3B_16 Bacterium P618/ | Seawater Swine feces | 100 100 |
13 | — | Alphaprot./unclassified3 | JF297198 EF554909 | Uncultured Hyphomicrobiaceae Devosia sp. G-He10 | Lobster shell legion — | 98 87 |
Abbreviations: OTU, operational taxonomic unit; RDP, Ribosomal Database Project; rRNA, ribosomal RNA.
Top BLAST hits and closest cultured BLAST hits for the nine OTUs with >1% of total 454 16 rRNA gene sequence abundance from tunicate samples. When available, almost complete 16S sequence was used for RDP classification and BLAST searches as indicated by an asterisk. BLAST search was performed on 18 January 2013.