. 2014 Jan 4;14:2. doi: 10.1186/1471-2229-14-2

Table 3.

Differentially expressed genes in R. stricta discussed in the Results section

ID	Group	Abv	Description	LogFC Apical Morning – Midday	LogFC Apical Midday - Dusk	LogFC Apical Dusk – Morning	LogFC Mature Morning - Midday	LogFC Mature Midday - Dusk	LogFC Mature Dusk - Morning
17395	HS	ACC oxidase 1	1-aminocyclopropane-1-carboxylate oxidase	-1.92^***	1.02^***	0.89^*	-0.97^***	-0.51^ns	1.48^***
4650	HS	ACC oxidase 2	1-aminocyclopropane-1-carboxylate oxidase	-2.72^***	2.14^***	0.58^ns	-3.82^***	1.05^**	2.77^***
11855	HS	ACC1	1-aminocyclopropane-1-carboxylate synthase	-0.58^**	-0.29^ns	0.87^**	-1.27^***	-0.22^ns	1.48^***
7628	HS	ACC2	1-aminocyclopropane-1-carboxylate synthase	-0.33^ns	-0.35^ns	0.69^**	-0.39^*	-0.61^***	1.01^***
22227	HS	AOC	Allene oxide cyclase	-0.81^***	0.94^***	-0.13^ns	-1.21^***	1.31^***	-0.09^ns
2272	HS	AOS	Allene oxide synthase	-0.69^ns	-1.18^ns	1.87^*	-2.21^***	-0.38^ns	2.59^***
11383	HS	ICS1	Isochorismate synthase	0.76^ns	0.07^ns	-0.83^ns	0.93^*	0.41^ns	-1.35^**
13155	HS	ICS2	Isochorismate synthase	0.71^ns	0.03^ns	-0.74^ns	0.87^*	0.39^ns	-1.26^**
11166	HS	IPT2	Isopentenyltransferase	0.90	-0.21^ns	-0.70^**	0.48^*	-0.31^ns	-0.16^ns
12704	HS	NCED	9-cis-epoxycarotenoid dioxygenase	1.26	-2.56^***	1.30^ns	0.56^ns	-3.39^***	2.83^***
16795	HS	OPR3	12-oxophytodienoate reductase	1.38	-0.54^ns	-0.83^ns	-0.03^ns	0.07^ns	-0.04^ns
10633	HS	ZEP	Zeaxanthin epoxidase	2.62	-2.13^***	-0.50^ns	2.26^***	-2.75^***	0.50^ns
14357	HS	IPT	Isopentenyltransferase	3.55	-2.14^***	-1.41^*	0.76^ns	-0.52^ns	-0.25^ns
8521	TF	CCA1	circadian clock associated1	-4.78	-3.80^***	8.58^***	-3.94^***	-5.43^***	9.37^***
15403	TF	CRF2a	cytokinin response factor 2	-0.14	-0.45^ns	0.59^ns	1.94^***	0.11^ns	-2.05^***
15603	TF	CRF2b	cytokinin response factor 2	-0.87^**	0.84^**	0.02^ns	-2.48^***	0.11^ns	2.37^***
15532	TF	DREB2	dehydration response element binding factor 2	3.66^***	-0.80^ns	-2.86^***	3.71^***	-1.44^***	-2.27^***
10837	TF	PRR5a	pseudo response regulators 5	1.90^***	-1.41^***	-0.49^ns	1.73^***	-0.88^***	-0.85^**
9003	TF	PRR5b	pseudo response regulators 5	1.87^***	-1.39^***	-0.49^ns	1.70^***	-0.87^**	-0.83^**
11103	TF	PRR7a	pseudo response regulators 7	3.48^***	-1.05^***	-2.43^***	2.89^***	-0.72^*	-2.18^***
7261	TF	PRR7b	pseudo response regulators 7	1.87^***	-1.32^***	-0.54^ns	1.85^***	-1.83^***	-0.01^ns
10590	TF	RAP2.12a	RAP2.12	-2.18^***	0.99^***	1.19^***	-3.20^***	1.45^***	1.75^***
16151	TF	RAP2.12b	RAP2.12	-2.18^***	1.00^***	1.18^***	-3.24^***	1.50^***	1.74^***
13680	TF	RAP2.4a	RAP2.4	-0.56^*	-0.67^*	1.23^***	-1.38^***	-0.42^ns	1.79^***
6139	TF	RAP2.4b	RAP2.4	-1.25^***	0.61^*	0.64^ns	-1.76^***	-0.40^ns	2.17^***
7222	TF	TOC1b	timing of CAB expression1	0.33^ns	0.08^ns	-0.41^ns	0.07^ns	0.40^*	-0.46^ns

Showing R. stricta contig identifier in first column, a code for section of results discussed (HS, hormone synthesis; TF, transcription factor) in second column, abbreviation (Abv) and description in third and fourth columns respectively. The remaining columns show the log(2) fold change between time points (from – to) within leaf type, along with FDR corrected significance test (<0.05 = *, <0.01 = **, <0.001 = ***, >0.05 ns).