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. 2013 Oct 29;31(2):272–287. doi: 10.1093/molbev/mst207

Table 2.

Summary Statistics of A. mellifera csd Sequences.

Locality Region n Sites h S Hd πtotal πS πn πn/πs ΘW Tajima's D Tajima' Ds Tajima's Dn Fay and Wu's H
Kenya Total 107 309 86 138 0.993 0.052 ± 0.0013 0.063 0.050 0.79 0.085 −1.45 −1.16 −1.40 −13.43
PSD 107 177 80 87 0.990 0.068 ± 0.0016 0.091 0.061 0.67 0.094 −1.17 −0.71 −1.17 −8.16
Exon 8 107 126 61 50 0.974 0.0318 ± 0.0017 0.025 0.034 1.37 0.076 −1.86* −1.82* −1.52 −5.30
Intron 107 124 71 47 0.986 0.037 ± 0.002 — — — 0.072 −1.73 — — —
Mt. Kenya Total 36 333 31 85 0.990 0.051 ± 0.002 0.057 0.049 0.86 0.062 −0.94 0.16 −1.11 −10.75
PSD 36 198 30 54 0.989 0.063 ± 0.002 0.078 0.059 0.75 0.066 0.49 0.68 −0.71 −5.60
Exon 8 36 135 26 31 0.973 0.033 ± 0.003 0.026 0.036 1.37 0.055 −1.59 −1.14 −1.57 −5.15
Intron 36 125 28 29 0.984 0.038 ± 0.002 — — — 0.056 −1.15 — — —
Nyambene Hills Total 37 315 33 92 0.992 0.056 ± 0.002 0.067 0.052 0.78 0.070 −0.88 −0.95 −0.92 −8.20
PSD 37 186 32 63 0.991 0.071 ± 0.002 0.089 0.065 0.73 0.081 −1.07 −0.98 −0.94 −5.34
Exon 8 37 129 28 29 0.976 0.034 ± 0.003 0.036 0.034 0.97 0.054 −1.31 −1.50 −1.07 −2.87
Intron 37 124 30 29 0.098 0.034 ± 0.003 — — — 0.054 — — — —
Mau Total 34 312 27 77 0.980 0.045 ± 0.002 0.056 0.042 0.75 0.060 −1.16 −1.08 −1.07 −6.14
PSD 34 180 26 49 0.973 0.058 ± 0.003 0.083 0.050 0.60 0.067 −0.75 −0.41 −0.79 −3.91
Exon 8 34 132 23 28 0.955 0.027 ± 0.003 0.020 0.031 1.54 0.052 −1.68 −1.81** −1.35 −2.23
Intron 34 124 26 30 0.980 0.039 ± 0.003 — — — 0.058 −1.33 — — —

Note.—Calculations were performed treating the data as one (Kenya) and three separate populations according to geographic region. Parameters are abbreviated as follows: Sequence number (N); haplotype diversity (Hd); number of nucleotides (n); number of segregating sites (S); average pairwise nucleotide diversity (π) for all (total), synonymous (s), and nonsynonymous (n) sites; Watterson’s theta (ΘW); Tajima’s D (calculated for all [D], synonymous [Ds] and nonsynonymous [Dn] sites); Fay and Wu’s H (H) statistic. PSD: Potential specifying domain. Intron sequences are from the csd region of exons 6–9. — : not calculable.

*P < 0.05.