Figure 3.

Box inference. Comparison of the basepair free energies, $g\left(n\right)$, inferred with the Box procedure from the force data of Molecule 1 ($b=5$; black curve) and from the synthetic data ($b=5$; blue curve) with the true free energies ($w=30$; turquoise curve). (Upper and middle) Sliding averages with width $w=30$ bp. Red curve (middle) shows the SP inference for Molecule 1, as in Fig. 2. (Lower) Box averages of widths 5 (left) and 10 bp (right). To see this figure in color, go online.