Skip to main content
. 2013 May 10;8(7):e24638. doi: 10.4161/psb.24638

Table 1: Details of the AS events analyzed.

primer pair AGI Gene description AS event 5′ primer 3′ primer  
12 At1g72320 APUM23 (ARABIDOPSIS PUMILIO 23); RNA binding 3'SS CGTCAACTGTGTTTTTGCATCC CATCAAATCCACGGTTACCC
36 At4g12790 ATP-binding family protein 3'SS GGTTTTGAGAGCAAAGAAAAACG    
59 At5g66010 RNA-binding (RRM/RBD/RNP motifs) family protein 3'SS GGCGGCAGGTCATGTACGG    
72 At2g04790 similar to unnamed protein product [Vitis vinifera] 5'SS CCCTGAAAGCATAGAAGCAGC CCCATGACTTATTAAACTCC
75 At2g36000 mitochondrial transcription termination factor-related 5'SS CTCGTTTAGTTTGGAGAATC CTTCATCAGCATTCATTAC
87 At4g35450 AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2) 5'SS CCACCACAACATTGTCTTTTC CCAGCGTTAGGAATAGATCTC
118 At2g02960 zinc finger (C3HC4-type RING finger) family protein 3'SS GGGGAGCTTTCACCAATTAG GCCTTATCATTAACCACCGG
148 At1g76510 ARID/BRIGHT DNA-binding domain-containing protein 5'SS CCGTTTCTCGCTTCTTTTTCTC CCTCTACAACACCTTTGGTACC
179 At5g48150 PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1) ES CCTTGTCTCCGACAACTTTC    
181 At5g05550 sequence-specific DNA binding transcription factors ES GGAGAAGCAGAGAATGGAAG GGATCCTCCAATTTCAATGAG
187 At5g02470 DPA; transcription factor 5'SS CAGTTTGTTTGTTTGTTTATAG CCAATTTCAGAATCATCATC
189 At5g43270 SPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2) 5'SS CCTCTGGGATCCATAAGTTTTG CCATCAATTTCCCACTCCATTG
227 At4g24740 AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) ES CCTCATACTCACATGGATCGTCGTCC    
243 At2g33830 dormancy/auxin associated family protein 3'SS CCGGACCTAAACCGGAGCATGGCC    
261 At4g10100 CNX7/SIR5 5SS CTCATGTGTGTGGTATTCACC CAGTGTTAGATCAGGCACACC
268 At1g03457 RNA-binding (RRM/RBD/RNP motifs) family protein 3'SS CCGTTGCAAGTTAAGTATGC CCCTCTTAGAATCTGTAGATCC
285 At3g19840 pre-mRNA-processing protein 40C 5'SS CCATATTCTGGTTCTCATCC CCAGGCATCTAACCGATTTCC
288 At3g12570 FYD 3'SS CCATGTGTTGTACTAGTGCC CCATGGATAGCAGTGTTGAC
295 At2g02390 ATGSTZ1 (GLUTATHIONE S-TRANSFERASE 18) 3'SS GGCTTGATTATGAGTATATACCAG    
309 At5g65060 MAF3 (MADS AFFECTING FLOWERING 3) 3'SS CAAGGAGTTACTAGAAATAGTCC CCCGTGACATTCCTCTGTCACC
310 At5g65070 MAF4 (MADS AFFECTING FLOWERING 4) 5'SS CCGTCGCTCTTATCATCATCTC    
314 At2g43410 FPA IR GGGCTGGCTCTTACGATAACAG GATGGCCTCCTCCAGTTTGG
322 At2g33480 ANAC041 (Arabidopsis NAC domain containing protein 41) 5'SS CCGATGTTTGTAAATCCGATCC CTGTCTCTTTCTCATTCTCC
324 At5g43270 SPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2) 5'SS GGGATCCATAAGTTTTGAG GCTTGAAGAATACAGAGAGG
327 At5g59950 RNA and export factor-binding protein, putative IR CTGCTCCATACCAATCAGCC CCACTTCTATCAAAATGAAC
343 At3g29160 AKIN11 (ARABIDOPSIS SNF1 KINASE HOMOLOG 11) 5'SS CCTGACTCAGCTCTGCGTCACC CCCAATTCCAAGAGTTTTACC
378 At3g62190 DNAJ heat shock N-terminal domain-containing protein 3'SS CCTGATGATCAGAAGCTTGTTGCC CCGAGGAACCCCAGTCTTGAC
380 At5g08185 npcRNA 78; MIR162a ES GTCCATTTGGTTTCATAAGG    

The number of the primer pair,6, 20 Arabidopsis gene identifier, gene description, AS event (3'SS, alternative 3’ splice site; 5′SS, alternative 5’ splice site; ES, exon skipping; IR, intron retention) and sequences of the primers are indicated.