Table 2. Localisation of the large and small binding pocket relative to PO4 and O3’ of PLP and binding of the substrates’ substituents in different amino acid and amine transaminases (upper part: fold I aminotransferases, lower part: fold IV aminotransferases).
Large binding pocketa | Small binding pocketa | ||||
local | substituent | local | substituent | ||
L-AroAATA ( S ) and L-AspTA ( S ) | PO4 | bulky or γ-carboxylate | O3’ | α-carboxylate | |
( S )-amine TA/L-Ala | O3’ | bulky or α-carboxylate | PO4 | methyl | |
D-ATA ( R ) | PO4 | alkyl or γ-carboxylate | O3’ | α-carboxylate | |
L-BCAT ( S ) | O3’ | bulky or γ-carboxylate | PO4 | α-carboxylate | |
( R )-amine TA/D-Ala b | O3’ | bulky or α-carboxylate | PO4 | methyl | |
AT-ωTA/L-Glu c | O3’ | γ-carboxylate | PO4 | α-carboxylate |
defined by the substrate size, in some structures the actual difference in the size of the pockets is very subtle.
proposed binding as seen in the scheme in Figure 6.
as observed in the solved structure of AT-ωTA.