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. 2014 Jan 30;9(1):e87350. doi: 10.1371/journal.pone.0087350

Table 2. Localisation of the large and small binding pocket relative to PO4 and O3’ of PLP and binding of the substrates’ substituents in different amino acid and amine transaminases (upper part: fold I aminotransferases, lower part: fold IV aminotransferases).

Large binding pocketa Small binding pocketa
local substituent local substituent
L-AroAATA ( S ) and L-AspTA ( S ) PO4 bulky or γ-carboxylate O3’ α-carboxylate
( S )-amine TA/L-Ala O3’ bulky or α-carboxylate PO4 methyl
D-ATA ( R ) PO4 alkyl or γ-carboxylate O3’ α-carboxylate
L-BCAT ( S ) O3’ bulky or γ-carboxylate PO4 α-carboxylate
( R )-amine TA/D-Ala b O3’ bulky or α-carboxylate PO4 methyl
AT-ωTA/L-Glu c O3’ γ-carboxylate PO4 α-carboxylate
a

defined by the substrate size, in some structures the actual difference in the size of the pockets is very subtle.

b

proposed binding as seen in the scheme in Figure 6.

c

as observed in the solved structure of AT-ωTA.