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Comparison of the numbers of variants called by the UnifiedGenotyper and HaplotypeCaller. The specific variants identified by UnifiedGenotyper and HaplotypeCaller are shown as numbers within each circle. Variants common to both methods are in purple, whereas those unique to UnifiedGenotyper are in green and unique to HaplotyeCaller are in yellow. These represent (A) the total number of novel SNPs, (B) novel INDELs, (C) novel LoF SNPs, and (D) novel LoF INDELs (D).
