Table 2.
CatchAll statistical analysis of bacterial 16S sequence diversity data.
| Sample ID | Orchard | Date of isolation | Tau | Observed Sp | Estimated total Sp | SE | Lower CB | Upper CB | GOF0 | GOF5 |
|---|---|---|---|---|---|---|---|---|---|---|
| FWS4 | Lindau | 21.05.2008 | 11 | 1774 | 18,027 | 3355 | 12,672 | 26,041 | 0.0014 | 0.0538 |
| FWS330 (W) | Lindau | 11.05.2011 | 10 | 2472 | 25,832 | 4802 | 18,161 | 37,292 | 0.0007 | 0.0195 |
| FWS321 (S) | Lindau | 11.05.2011 | 14 | 2034 | 17,124 | 2392 | 13,119 | 22,589 | 0.0067 | 0.0293 |
| FWS5 | Güttingen | 21.05.2008 | 10 | 2470 | 32,694 | 8160 | 20,453 | 53,322 | 0.0019 | 0.0432 |
| FWS339 (W) | Güttingen | 11.05.2011 | 51 | 2263 | 26,338 | 7310 | 15,716 | 45,350 | 0 | 0.0064 |
| FWS360 (S) | Güttingen | 11.05.2011 | 12 | 2942 | 34,112 | 4590 | 26,337 | 44,480 | 0.0003 | 0.0232 |
| FWS1 | Wädenswil | 21.05.2008 | 10 | 2227 | 28,844 | 4929 | 20,802 | 40,376 | 0.0003 | 0.0127 |
| FWS309 (W) | Wädenswil | 11.05.2011 | 11 | 2762 | 48,611 | 15,414 | 26,918 | 89,855 | 0.0043 | 0.0444 |
| FWS312 (S) | Wädenswil | 11.05.2011 | 9 | 2682 | 59,646 | 32,370 | 22,926 | 163,437 | 0.0003 | 0.0136 |
The results described illustrate the variations in observed and estimated “species” within each soil. This provides an analysis of the variations in diversity and estimated diversity.
S, streptomycin treated; W, water treated.
Tau: A tau test is a non-parametric hypothesis test for statistical dependence based on the tau coefficient to measure rank correlation.
Estimated total species: estimated total diversity, which was calculated using the CatchAll model to identify the estimated number of “species” that could be present in the soil sample.
Sp, “species”; SE, standard error; Lower and upper CB, lower and upper 95 confidence bounds, respectively.
GOF0 should be regarded as a diagnostic\ divergence statistic, signaling divergence from the null hypothesis (which states that the model is correct), while GOF5 represents the p-value from a legitimate statistical hypothesis test of model.
The model used was the Two Mixed Experiment model for all except sample FWS339, where the Three Mixed Experiment model was used. The Two Mixed Model and Three Mixed Models are statistical sampling models used to analyze the data.