Table 1.

The comparison of various algorithms using Gavin dataset.

Algorithm	Ncp	| P |	Precision(%)	Recall(%)	F-measure(%)
MCL	103	232	44.40	42.76	43.56
CPM	54	98	55.10	20.79	30.19
CoAch	178	326	54.60	41.36	47.06
Our algorithm	116	185	62.70	38.32	47.56

Table 1 shows the comparison of MCL, CPM, CoAch and our algorithm using Gavin dataset. The comparison is based on the number of predicted complexes, the number of predicted complexes which match at least one known protein complex, precision, recall and F-measure.