. 2013 Dec 3;55(1):15–26. doi: 10.1007/s13353-013-0186-5

Table 5.

Quantitative trait loci (QTLs) detected by composite interval mapping (CIM) for plant height (Ph), length of spike (Sl), number of spikelets (Sps) and kernels per spike (Kps), kernel weight per spike (Kw) and thousand kernel weight (Tkw) revealing major phenotypic effect (R² > 10) in populations RIL-S and/or RIL-M. QTLs in bold are those which were identified in the regions indicated by both CIM and the K-W test

Chromosome	RIL-S						RIL-M
Chromosome	Trait/year	Interval	Marker	LOD	a	R²	Trait/year	Interval	Marker	LOD	a	R²
1R	Sl10	39–44	XrPt506299	2.81	−0.54	10.95	Kw09	7–12	XrPt119594	3.58	−0.08	11.5
	Sl08	147–149	Xscsz732L530	2.84	0.50	10.92	Ph09	52–58	XrPt509169	3.16	3.79	10.61
	Sps08	168–173	XrPt410988	3.58	−1.77	15.61	Ph10	53–63	XrPt399269	6.36	5.87	19.21
							Ph08	54–58	XrPt509169	4.73	5.71	15.93
							Sl08	108–110	XrPt508375	3.63	−0.39	10.32
							Tkw08	108–110	XrPt508375	7.19	−2.50	20.21
2R	Sl10	36–39	XrPt390292	3.56	0.92	15.38	Sps08	22–24	Xrpt400282	3.56	−1.17	10.06
	Ph09	42–46	XrPt509630	3.51	10.32	14.36	Ph08	45–57	Xrpt399313	3.54	4.34	10.61
	Ph11	45–47	XrPt506926	3.94	7.82	14.68	Sl08	52–55	Xrpt400417	5.26	0.49	14.61
	Ph08	45–46	XrPt401256	8.69	8.01	27.92	Tkw09	67–85	Xrpt347771	3.85	−2.01	12.63
	Sl09	47–49	XrPt509669	2.57	0.49	12.55	Tkw10	68–76	Xrpt347771	4.27	−2.23	14.65
	Sps08	53–54	XrPt400417	3.11	3.08	15.64	Kw09	68–81	Xrpt347771	3.10	−0.09	11.12
	Ph11	54–57	XrPt389556	5.93	10.56	25.01	Kw08	75–78	Xrpt389385	3.15	−0.13	10.26
	Sps08	58–66	XrPt411019	2.77	1.83	13.71
3R	Ph10	2–5	XrPt349249	2.58	7.61	10.93	Sl10	46–56	XrPt411440	2.72	0.43	10.56
	Ph09	60–65	XrPt507739	4.11	11.54	19.47	Ph09	52–57	XrPt507374	5.09	−4.19	14.50
	Sl08	92–96	XrPt400848	2.65	−0.85	13.85	Ph10	54–57	XrPt507374	5.36	−5.00	15.56
	Sps08	92–96	XrPt400848	4.26	−2.88	23.53	Sps09	111–118	XrPt505214	3.60	0.81	10.67
	Ph09	176–178	XrPt505542	2.88	14.86	11.78	Sps08	112–116	XrPt505214	4.08	1.47	12.64
4R	Ph11	6–12	XrPt509509	4.25	7.12	19.90	Kw10	55–59	XrPt509687	3.72	0.11	14.56
	Ph09	7–14	XrPt509509	2.47	8.99	12.97	Kps08	87–91	XrPt508114	3.05	6.77	10.80
	Ph10	8–12	XrPt509509	4.90	9.48	25.86	Kw08	198–208	XrPt390758	4.49	−0.13	13.07
	Sps10	15–19	XrPt507218	3.49	1.97	13.8	Kw09	199–202	XrPt400996	4.61	−0.12	13.30
	Ph09	22–25	XrPt509687	2.84	9.07	10.02	Tkw09	199–202	XrPt400996	3.97	−2.17	11.24
	Sl10	23–26	XrPt509687	2.65	0.72	11.00	Kps08	206–208	XrPt401039	4.47	−3.94	12.54
	Ph10	69–74	XrPt508114	2.86	8.97	10.8
	Ph09	83–86	XrPt389771	3.33	18.11	17.36
	Ph08	119–121	XrPt505925	2.7	−8.13	11.15
	Sl10	132–136	XrPt399893	3.1	0.50	11.70
	Sps10	133–136	XrPt399893	3.46	2.04	12.88
	Sps08	190–193	XrPt505295	3.36	−1.93	12.14
5R	Sl08	89–90	XrPt401037	4.39	1.40	17.68	Kps08	21–24	XrPt401095	4.43	−9.12	14.90
	Sps08	90–101	XrPt505835	2.47	1.81	11.86	Kw08	21–26	XrPt401095	3.13	−0.25	11.14
	Sps08	134–136	XrPt507255	2.34	2.26	10.73	Sl08	52–64	XrPt505276	3.52	0.43	11.52
	Sl11	136–151	XrPt505795	2.37	0.44	13.26	Sl09	67–77	XrPt507127	2.30	−0.39	10.94
	Sl10	139–147	XrPt120054	2.65	0.54	11.80
6R	Ph10	5–19	XrPt401305	2.64	5.71	11.42	Sl08	1–16	XrPt410992	5.74	−0.43	14.51
	Sps11	49–57	XrPt400126	3.4	1.7	15.6	Kw09	122–140	XrPt400157	3.73	−0.08	10.34
	Ph08	142–147	XrPt411401	2.79	5.31	11.64	Sl08	154–155	XrPt347758	5.28	0.74	17.84
	Sl08	154–157	XrPt507753	3.06	0.82	13.15	Sl08	166–167	XrPt390768	4.04	−0.51	10.69
	Sps08	225–228	XrPt509721	2.83	1.68	12.49
7R	Sps11	56–59	XrPt505219	3.48	−1.58	16.15	Sl09	13–30	XrPt411166	2.88	0.37	16.26
	Sl10	57–59	XrPt505219	4.35	−0.87	19.16	Ph10	53–61	XrPt400783	4.14	4.41	12.04
	Sps10	57–59	XrPt505219	3.51	−2.21	15.07
	Sl09	65–72	XrPt401795	2.39	−0.63	10.87
	Sps09	65–72	XrPt401795	2.51	−1.79	12.84
	Ph10	80–86	XrPt506902	2.39	6.14	10.19
	Ph09	161–169	XrPt400016	4.03	8.7	18.4
	Sl11	167–171	XrPt400016	2.56	0.53	12.45
	Sl09	170–172	XrPt344822	2.81	0.68	13.06
	Sps09	170–172	XrPt390593	2.51	1.76	11.91

a additive effect of the maternal allele