FIG 4.

Antisense transcription at known genes and gene classes. (A) Ratio of antisense to sense RPKM values at 24 h postinduction for annotated gene classes using RNA-seq coverage from poly(A) selected (blue) and ribodepleted (orange) RNA. Transcription at EBER loci are excluded. (B) RPKM values for EBNA genes calculated using an unstranded (purple) or strand-specific (green) method on RNA-seq data from poly(A) selected RNA (C) Sense and antisense RPKM values for annotated gene classes at nine time points after reactivation.