FIG 8.

Splice junctions at 24 h postinduction (A) Splice junctions supported by at least five RNA-seq reads from poly(A) selected RNA or by at least ten RNA-seq reads from ribodepleted RNA. Annotated splice junctions are color coded: blue, lytic genes; maroon, latent genes; and green, noncoding transcripts. (B) Venn diagram indicating numbers of junctions that are annotated, the number that are detected in poly(A) RNA data, and the number detected in ribodepleted RNA data. (C) Annotated and novel splice junctions detected in poly(A) selected or ribodepleted RNA.