TABLE 1.
Sources of HSV-1 strains, sequencing methods used, and accession numbers
| Strain | Country (city), time (yr) of strain collection/isolation (reference[s]) | Sequencing method (reference[s]) | Accession no. |
|---|---|---|---|
| 17 | UK (Glasgow), 1973 (51) | Prior (44, 45) | JN555585, NC_001806 |
| CR38a | China (Shenyang), 1980-1988 (20) | Sanger | HM585508 |
| E03a | Kenya (Nairobi), 1981-1984 (32) | Sanger | HM585509 |
| E06 | Kenya (Nairobi), 1981-1984 (32) | Illumina | HM585496 |
| E07 | Kenya (Nairobi), 1981-1984 (32) | Illumina | HM585497 |
| E08 | Kenya (Nairobi), 1981-1984 (32) | Illumina | HM585498 |
| E10 | Kenya (Nairobi), 1981-1984 (32) | Illumina | HM585499 |
| E11 | Kenya (Nairobi), 1981-1984 (32) | Illumina | HM585500 |
| E12 | Kenya (Nairobi), 1981-1984 (32) | Illumina | HM585501 |
| E13 | Kenya (Nairobi), 1981-1984 (32) | Illumina | HM585502 |
| E14a | Kenya (Nairobi), 1981-1984 (32) | Sanger | HM585510 |
| E15 | Kenya (Nairobi), 1981-1984 (32) | Illumina | HM585503 |
| E19a | Kenya (Nairobi), 1981-1984 (32) | Sanger | HM585511 |
| E22 | Kenya (Nairobi), 1981-1984 (32) | Illumina | HM585504 |
| E23 | Kenya (Nairobi), 1981-1984 (32) | Illumina | HM585505 |
| E25 | Kenya (Nairobi), 1981-1984 (32) | Illumina | HM585506 |
| E35 | Kenya (Nairobi), 1981-1984 (32) | Illumina | HM585507 |
| R11a | South Korea (Seoul), 1980-1988 (20) | Illumina | HM585514 |
| R62a | South Korea (Seoul), 1980-1988 (20) | Illumina | HM585515 |
| S23a | Japan (Sapporo), 1980-1983 (36) | Sanger | HM585512 |
| S25a | Japan (Sapporo), 1980-1983 (36) | Sanger | HM585513 |
| F | USA (Chicago), 1968 (52) | Prior (29) | GU734771 |
| H129 | USA (San Francisco), 1983 (53) | Prior (29) | GU734772 |
| McKrae | USA (Gainesville), 1965 (55) | Prior (49) | JQ730035, JX142173 |
| KOS | USA (Houston), 1964 (54) | Prior (48) | JQ673480, JQ780693 |
| HF10 | USA (New York),b 1925 (56, 57) | Prior (47) | DQ889502 |