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. 2014 Jan;88(1):377–392. doi: 10.1128/JVI.02689-13

TABLE 4.

Mapping of 3′UTRs of KSHV genesa

Gene Pol 3′UTR cloning ORF position PAS sequence PAS position TTS from this study TTS from other studies Source or reference
ORF-K1 + Y 105–974 AAUACA 2953–2958 2970 2972 64
ORF4 + Y 1142–2794 AAUACA 2953–2958 2972 64
ORF6 + Y 3210–6611 AUUAAA 7008–7013 7035 This study
ORF7 + N 6628–8715 Not mapped
ORF8 + N 8699–11236 Not mapped
ORF9 + Y 11363–14401 AAUAAA 17055–17060 17079 This study
ORF10 + Y 14519–15775 AAUAAA 17055–17060 17070 This study
ORF11 + Y 15790–17013 AAUAAA 17055–17060 17070 17080 69
ORF-K2 Y 17875–17261 AAUAAA 17205–17200 17184 17182 70
ORF2 Y 18553–17921 AAUAAA 17205–17200 17181 This study
ORF-K3 Y 19609–18608 AUUAAA 18612–18607 18593 18595, 18577 71
ORF70 Y 21104–20091 AUUAAA 18612–18607 18594 This study
ORF-K4 Y 21832–21548 AAUAAA 21348–21343 21324 This study
ORF-K4.1 N 22529–22185 AAUAAA 21348–21343 21324 52, 72, 73
ORF-K4.2 N 23077–22745 AAUAAA 21348–21343 21324 21325 52, 73
ORF-K5 Y 26483–25713 AUUAAA 25574–25569 25545 25538 74
ORF-K6 Y 27424–27137 AAUAAA 26920–26915 26895 This study
ORF-K7 + Y 28622–29002 AAUAAA 29719–29724 29743 This study
ORF16 + Y 30145–30672 AUUAAA/AAUGAA 30732–30737/30736-30741 30753 This study
ORF17 Y 32482–30821 AAUAAA 30765–30760 30744 This study
ORF18 + Y 32424–33197 AUUAAA 33431–33436 33450 This study
ORF19 Y 34843–33194 AUUAAA 32873–32868 32862 This study
ORF20 N 35573–34611 Not mapped
ORF21 + Y 35383–37125 AAUAAA 39312–39317 39328 This study
ORF22 + Y 37113–39305 AAUAAA 39312–39317 39334 This study
ORF23 Y 40516–39302 AAGAAA 39278–39273 39250 This study
ORF24 Y 42778–40520 AAUAAA 39251–39246 39227 This study
ORF25 + Y 42777–46907 AAUAAA 48741–48746 48789 This study
ORF26 + Y 46933–47850 AAUAAA 48741–48746 48769 This study
ORF27 + Y 47873–48745 AUUAAA 4877–48775 48780 This study
ORF28 + N 48991–49299 Not mapped
ORF29b Y 50417–49362 AAUAAA 49366–49361 49342 49347 75
ORF30 + Y 50623–50856 AAUAAA 54072–54077 54099 53
ORF31 + Y 50763–51437 AAUAAA 54072–54077 54099 53
ORF32 + Y 51404–52768 AAUAAA 54072–54077 54099 53
ORF33 + Y 52761–53699 AAUAAA 54072–54077 54100 53
ORF29a N 54676–53738 Not mapped
ORF34 + Y 54675–55658 AAUAAA 58853–58858 58878 This study
ORF35 + Y 55639–56091 AAUAAA 58853–58858 58878 58881 76
ORF36 + Y 55976–57301 AAUAAA 58853–58858 58878 This study
ORF37 + Y 57273–58733 AAUAAA 58853–58858 58878 This study
ORF38 + Y 58688–58873 Not mapped
ORF39 Y 60175–58976 AAUAAA 58906–58901 58885 This study
ORF40 + Y 60308–61681 AAUAAA 62540–62545 62561, 62559 This study
ORF41 + Y 61827–62444 AAUAAA 62540–62545 62559 This study
ORF42 Y 63272–62436 AAUAAA 62440–62435 62416 This study
ORF43 Y 64953–63136 AAUAAA 62440–62435 62416 This study
ORF44 + Y 64892–67258 AAUAAA 67295–67300 67319 This study
ORF45 Y 68576–67353 AAUAAA 67350–67345 67323 67329 52
ORF46 Y 69404–68637 AAUAAA 67350–67345 67323 This study
ORF47 Y 69915–69412 AAUAAA 67350–67345 67328 This study
ORF48 Y 71381–70173 AAUAAA 67350–67345 67333 This study
ORF49 Y 72538–71630 AAUAAA 71634–71629 71615 71618 77
ORF50 + Y 72734–74629 AAUAAA 76714–76719 76737 76737 52
ORF-K8 + Y 74850–75569 AAUAAA 76714–76719 76737 76737 52
ORF-K8.1 + N 75785–76690 AAUAAA 76714–76719 76737 76737 52
ORF52 Y 77197–76802 AAUAAA 76729–76724 76706 This study
ORF53 Y 77665–77333 AAUAAA 76729–76724 76706 This study
ORF54 + Y 77667–78623 AAUAAA 78753–78778 78778 This study
ORF55 Y 79448–78765 AAUAAA 78724–78719 78706 This study
ORF56 + Y 79436–81967 AAUAAA 83608–83613 83631 83628, 83631, 82634 48
ORF57 + Y 83717–83544 AAUAAA 83608–83613 83630 83628, 83631, 82634 48
ORF-K9 Y 85209–83860 AAUAAA 83808–83803 83789 83787, 83788, 83789 47
ORF-K10 Y 88164–86074 AAUAAA 86030–86025 86004 86006, 86007, 86008 47
ORF-K10.5 Y 91394–89600 AAUAAA 89392–89387 89372 89373 47
ORF-K11 N 93367–91964 AAUAAA 91753–91748 91751, 91756 47
ORF58 Y 95544–94471 AAUAAA 94488–94483 94466 94469, 94477 48
ORF59 Y 96939–95549 AAUAAA 94492–94487 94466 94469, 94477 48
ORF60 Y 97787–96870 AAUAAA 94492–94487 94466 This study
ORF61 Y 100194–97816 AAUAAA 94492–94487 94471 This study
ORF62 Y 101194–100199 AAUAAA 98298–98293 98723 This study
ORF63 + N 01208–103994 Not mapped
ORF64 + Y 104000–111907 AAUAAA 111886–111891 111912 This study
ORF65 Y 112443–111931 AAUAAA 111826–111807 111807 This study
ORF66 Y 113759–112470 AAUAAA 111826–111807 111809 This study
ORF67 Y 114508–113693 AAUAAA 111826–111807 111809 This study
ORF68 + N 114768–116405 Not mapped
ORF69 + Y 116669–117346 AAUAAA 117403–117408 117424 117425 78
ORF-K12 Y 118101–117919 AAUAAA 117447–117442 117432 117432 79
ORF71 Y 122710–122145 AAUAAA 122094–122089 122068 122070 50
ORF72 Y 123566–122793 AAUAAA 122094–122089 122068 122070 50
ORF73 Y 127296–123808 AAUAAA 122094–122089 122065 122070 50
ORF-K14 + Y 127883–128929 AUUAAA 130518–130523 130547 130545 80
ORF74 + Y 129371–130399 AUUAAA 130518–130523 130547 130545 80
ORF75 Y 134440–130550 AUUAAA 130518–130523 130499 This study
ORF-K15 N 136279–135997 Not mapped
a

Pol, the direction of RNA Pol II transcription; PAS, poly(A) signal.; TTS, transcription termination site.

HHS Vulnerability Disclosure