Table 4.
Comparison of rank changes (RCs) for ERG11 in network training phase
| |
ERG11
|
|||
|---|---|---|---|---|
| |
+ Δerg11/ERG11
|
+ Δerg6
|
+ FL |
|
| Expt analyzed | Rank change (RC) | Percentile | Rank change (RC) | Rank change (RC) |
| FLGI10, 1DT |
488 |
97 |
−82 |
−75 |
| FLGI10, 4DT |
344 |
92 |
−45 |
142 |
| FL GI20, 4DT |
585 |
96 |
−136 |
−98 |
| FL GI30, 4DT |
301 |
88 |
−41 |
−21 |
| FL GI40, 4DT | 421 | 94 | −70 | −37 |
RCs were reported for ERG11 across 5 FL treatment experiments, under 3 different training compendiums: + Δerg11/ERG11, + Δerg6, and + FL treatment. Percentile of RC was computed as the percentage of genes with a RC as high or higher than the target gene. RC percentiles ≥95 indicated significant perturbation as identified by SSEM-Lasso.