Table 3. Significantly differently expressed chromatin and DNA modifying enzymes as determined by Human Epigenetic Chromatin Modification Enzyme qPCR Array.
MDA-MB-231 WA 700 nM/MDA-MB-231 DMSO | MCF-7 WA 700 nM/MCF-7 DMSO | ||||
Cofactor group | Gene | Fold change | p-value | Fold change | p-value |
DNA methyltransferases | DNMT3B | ns* | ns | −3.13 | 1.63E-03 |
Histone acetyltransferases | CDYL | 3.41 | 4.57E-02 | ns | ns |
MYST2 | 4.54 | 3.22E-02 | ns | ns | |
NCOA3 | 7.65 | 2.33E-02 | ns | ns | |
ESCO2 | ns | ns | −3.79 | 4.91e-03 | |
Histone methyltransferases | PRMT5 | 3.06 | 1.71E-02 | ns | ns |
SMYD3 | −2.17 | 9.19E-04 | ns | ns | |
SET domain proteins (Histone methyltransferase activity) | SETD2 | 2.57 | 2.59E-02 | ns | ns |
SETD3 | 2.00 | 2.82E-02 | ns | ns | |
SETD4 | 4.52 | 1.16E-03 | ns | ns | |
SETDB2 | 3.60 | 1.05E-02 | ns | ns | |
SUV420H1 | 3.74 | 2.15E-02 | ns | ns | |
Histone demethyltransferases | JARID1B | 2.48 | 1.57E-02 | 2.47 | 1.14E-02 |
JMJD2C | 6.36 | 9.15E-03 | ns | Ns | |
JMJD3 | 22.34 | 9.14E-03 | ns | Ns | |
MBD2 | 2.02 | 3.18E-02 | ns | Ns | |
Histone ubiquityn ligases | MYSM1 | 3.41 | 8.30E-03 | ns | Ns |
UBE2B | 3.45 | 6.60E-03 | ns | Ns | |
USP16 | 2.35 | 3.37E-03 | ns | Ns | |
USP21 | 2.47 | 3.56E-02 | ns | Ns | |
Histone kinases | AURKA | ns | ns | −2.37 | 9.98E-03 |
AURKB | ns | ns | −3.75 | 4.36E-02 | |
AURKC | 6.78 | 2.21E-02 | 4.60 | 1.71E-02 | |
RPS6KA3 | −2.04 | 4.00E-02 | ns | Ns |
ns- not significant.