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. 2014 Feb 3;9(2):e87905. doi: 10.1371/journal.pone.0087905

Table 2. Proteins indirectly regulated by AcnA.

Locus function fold change p-value
WT
FrEUN1fDRAFT_6253 RNA binding S1 domain protein 1.28 0.04
FrEUN1fDRAFT_6253 RNA binding S1 domain protein 1.83 0.11
ThimaDRAFT_4816 translation elongation factor G 0.59 0.07
HMPREF1013_05577 50S ribosomal protein L5 1.94 0.03
SP187300_0321 50S ribosomal protein L5 (BL6) 3.23 0.10
Niako_6338 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 1.82 0.17
SCO4729 DNA-directed RNA polymerase subunit alpha 1.70 0.11
SSQG_04836 chaperonin GroL 1.22 0.00
SSQG_04836 chaperonin GroL 1.85 0.01
SSQG_04185 chaperone DnaK 1.52 0.04
SSQG_04185 chaperone DnaK 2.19 0.13
SSQG_05867 protease 1.36 0.13
SSQG_03555 tellurium resistance protein 1.68 0.04
SSQG_03555 tellurium resistance protein 2.10 0.02
SSQG_00870 6-phosphogluconate dehydrogenase NAD-binding protein 1.65 0.02
SSQG_00870 6-phosphogluconate dehydrogenase NAD-binding protein 1.66 0.02
TBCG_03283 isocitrate dehydrogenase [NADP] Icd1 1.66 0.12
SSQG_02359 3-oxoacyl-[acyl-carrier-protein] synthase 2 4.24 0.09
CV_2767 aspartate-semialdehyde dehydrogenase 1.80 0.02
BURMUCGD1_1985 putative cellulose synthase operon protein C 1.54 0.04
FraEuI1c_1109 guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase 2.52 0.01
SSQG_03741 phosphoribosylaminoimidazole-succinocarboxamide synthetase 1.61 0.02
RS9917_04255 hypothetical protein RS9917_04255 1.74 0.01
SSQG_05193 conserved hypothetical protein 1.98 0.10
SSQG_02286 conserved hypothetical protein 2.03 0.17
SSQG_04729 conserved hypothetical protein 4.20 0.00
G11MC16DRAFT_3049 conserved hypothetical protein 1.64 0.07
SSQG_03600 conserved hypothetical protein 1.79 0.02
FrEUN1fDRAFT_6253 RNA binding S1 domain protein 0.59 0.07
SSQG_04836 chaperonin GroL 0.61 0.09
BBAL3_51 TldD/PmbA family 0.69 0.03
SSTG_00732 glyceraldehyde-3-phosphate dehydrogenase, type I 0.55 0.08
SCO3096 phosphopyruvate hydratase (enolase) 0.52 0.02
SCO3096 phosphopyruvate hydratase (enolase) 0.51 0.01
CV_2767 aspartate-semialdehyde dehydrogenase 0.61 0.13
SSQG_01989 bifunctional HisA/TrpF protein 0.68 0.03
APM_0032 conjugative relaxase domain protein 0.63 0.09
APM_0032 conjugative relaxase domain protein 0.48 0.02
SSQG_03895 single-strand binding protein 0.31 0.02
SSQG_01951 two-component system response regulator 0.51 0.03
Cbei_3045 methyl-accepting chemotaxis sensory transducer 0.66 0.15
Acid345_0176 radical SAM protein 0.54 0.16
BFAG_02012 cobalamin biosynthesis protein CobD 0.82 0.01
SSQG_03772 uracil phosphoribosyltransferase 0.64 0.10
SSQG_02905 conserved hypothetical protein 0.49 0.00
SSQG_07592 secreted protein 0.43 0.08
SSQG_07014 secreted protein 0.34 0.04
SSQG_07014 secreted protein 0.46 0.15
SSQG_07014 secreted protein 0.73 0.00
MacnA
SSQG_05040 transcription elongation factor GreA 1.37 0.06
SSQG_05128 translation-associated GTPase 1.24 0.06
SSQG_04311 anti-sigma factor 1.51 0.10
SSQG_04185 chaperone DnaK 1.38 0.11
SSQG_05430 methylmalonyl-CoA epimerase 1.90 0.08
SSQG_05406 ATP synthase F1, beta subunit 2.23 0.10
SSQG_01256 forkhead-associated protein 1.40 0.05
SSQG_02356 malonate decarboxylase, epsilon subunit 2.34 0.13
SSQG_03235 4-(cytidine 5′-diphospho)-2-C-methyl-D-erythritol kinase 1.59 0.06
pO86A1_p160 aminoglycoside-3′-O-phosphotransferase 1.45 0.02
SSQG_01691 secreted protein 1.41 0.05
SSQG_02341 conserved hypothetical protein 1.63 0.04
SSQG_02509 glycyl-tRNA synthetase 0.52 0.04
SSQG_05458 thioredoxin 0.53 0.07
SSQG_01736 3-oxoacyl-[acyl-carrier-protein] reductase 0.69 0.07
SSQG_01640 cell division protein SepF1 4.97 0.20
SSQG_02020 cell division protein SepF2 0.79 0.01
HMPREF0873_01794 ABC transporter, ATP-binding family protein 0.51 0.07
SSQG_06852 monomeric isocitrate dehydrogenase 0.44 0.16
SSQG_05319 dehydrogenase 0.75 0.03